Index

_

__eq__() (hed.models.hed_group.HedGroup method) (hed.schema.hed_schema.HedSchema method) __init__() (hed.errors.error_reporter.ErrorHandler method) (hed.errors.exceptions.HedFileError method) (hed.models.base_input.BaseInput method) (hed.models.definition_dict.DefinitionDict method) (hed.models.hed_group.HedGroup method) (hed.models.hed_string.HedString method) (hed.models.hed_tag.HedTag method) (hed.models.sidecar.Sidecar method) (hed.models.spreadsheet_input.SpreadsheetInput method) (hed.models.tabular_input.TabularInput method) (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_entry.HedSchemaEntry method) (hed.schema.hed_schema_entry.HedTagEntry method) (hed.schema.hed_schema_entry.UnitClassEntry method) (hed.schema.hed_schema_entry.UnitEntry method) (hed.schema.hed_schema_group.HedSchemaGroup method) (hed.schema.hed_schema_section.HedSchemaSection method) (hed.tools.analysis.event_manager.EventManager method) (hed.tools.analysis.file_dictionary.FileDictionary method) (hed.tools.analysis.hed_tag_manager.HedTagManager method) (hed.tools.analysis.hed_type.HedType method) (hed.tools.analysis.hed_type_manager.HedTypeManager method) (hed.tools.analysis.tabular_summary.TabularSummary method) (hed.tools.bids.bids_dataset.BidsDataset method) (hed.tools.bids.bids_file.BidsFile method) (hed.tools.bids.bids_file_group.BidsFileGroup method) (hed.tools.bids.bids_sidecar_file.BidsSidecarFile method) (hed.tools.bids.bids_tabular_file.BidsTabularFile method) (hed.validator.def_validator.DefValidator method) (hed.validator.hed_validator.HedValidator method) (hed.validator.onset_validator.OnsetValidator method) (hed.validator.sidecar_validator.SidecarValidator method) (hed.validator.spreadsheet_validator.SpreadsheetValidator method)

__iter__() (hed.models.sidecar.Sidecar method) __str__() (hed.models.hed_group.HedGroup method) (hed.models.hed_tag.HedTag method) (hed.tools.analysis.tabular_summary.TabularSummary method) (hed.tools.bids.bids_file.BidsFile method)

A

add_context_and_filter() (hed.errors.error_reporter.ErrorHandler method) add_definitions() (hed.models.definition_dict.DefinitionDict method) add_type() (hed.tools.analysis.hed_type_manager.HedTypeManager method) add_unit() (hed.schema.hed_schema_entry.UnitClassEntry method) aggregate_code_counts() (hed.errors.error_reporter.ErrorHandler static method) all_hed_columns (hed.models.sidecar.Sidecar property) AllowedCharacter (hed.schema.hed_schema_constants.HedKey attribute)

AnnotationProperty (hed.schema.hed_schema_constants.HedKey attribute) append() (hed.models.hed_group.HedGroup method) assemble() (hed.models.base_input.BaseInput method) attribute_has_property() (hed.schema.hed_schema_entry.HedSchemaEntry method) attributes (hed.models.hed_tag.HedTag property) (hed.schema.hed_schema.HedSchema property) Attributes (hed.schema.hed_schema_constants.HedSectionKey attribute)

B

BAD_COLUMN_NAMES (hed.errors.exceptions.HedExceptions attribute) BAD_HED_LIBRARY_NAME (hed.errors.exceptions.HedExceptions attribute) BAD_PARAMETERS (hed.errors.exceptions.HedExceptions attribute) BAD_WITH_STANDARD (hed.errors.exceptions.HedExceptions attribute) BAD_WITH_STANDARD_MULTIPLE_VALUES (hed.errors.exceptions.HedExceptions attribute) base_tag (hed.models.hed_tag.HedTag property) base_tag_has_attribute() (hed.models.hed_tag.HedTag method) (hed.schema.hed_schema_entry.HedTagEntry method)

BaseInput (class in hed.models.base_input) BidsDataset (class in hed.tools.bids.bids_dataset) BidsFile (class in hed.tools.bids.bids_file) BidsFileGroup (class in hed.tools.bids.bids_file_group) BidsSidecarFile (class in hed.tools.bids.bids_sidecar_file) BidsTabularFile (class in hed.tools.bids.bids_tabular_file) BLANK_HED_STRING (hed.errors.error_types.SidecarErrors attribute) BoolRange (hed.schema.hed_schema_constants.HedKey attribute)

C

cache_local_versions() (in module hed.schema.hed_cache) cache_xml_versions() (in module hed.schema.hed_cache) can_save() (hed.schema.hed_schema.HedSchema method) CANNOT_PARSE_JSON (hed.errors.exceptions.HedExceptions attribute) CANNOT_PARSE_RDF (hed.errors.exceptions.HedExceptions attribute) CANNOT_PARSE_XML (hed.errors.exceptions.HedExceptions attribute) casefold() (hed.models.hed_group.HedGroup method) (hed.models.hed_tag.HedTag method) CHARACTER_INVALID (hed.errors.error_types.ValidationErrors attribute) check_compliance() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_group.HedSchemaGroup method) check_for_banned_tags() (hed.validator.onset_validator.OnsetValidator static method) check_for_definitions() (hed.models.definition_dict.DefinitionDict method) check_if_in_original() (hed.models.hed_group.HedGroup method) check_reserved_compatibility() (hed.validator.reserved_checker.ReservedChecker method) check_tag_formatting() (hed.validator.hed_validator.HedValidator method) check_tag_requirements() (hed.validator.reserved_checker.ReservedChecker method) children (hed.schema.hed_schema_entry.UnitClassEntry property) clear_contents() (hed.tools.bids.bids_file.BidsFile method)

CLOSING_GROUP_CHARACTER (hed.models.hed_string.HedString attribute) COLUMN (hed.errors.error_types.ErrorContext attribute) column_data (hed.models.sidecar.Sidecar property) column_metadata() (hed.models.base_input.BaseInput method) columns (hed.models.base_input.BaseInput property) combine_dataframe() (hed.models.base_input.BaseInput static method) COMMA_MISSING (hed.errors.error_types.ValidationErrors attribute) compress_strings() (hed.tools.analysis.event_manager.EventManager static method) contents (hed.tools.bids.bids_file.BidsFile property) ConversionFactor (hed.schema.hed_schema_constants.HedKey attribute) convert_to_form() (hed.models.base_input.BaseInput method) convert_to_long() (hed.models.base_input.BaseInput method) convert_to_short() (hed.models.base_input.BaseInput method) copy() (hed.models.hed_group.HedGroup method) (hed.models.hed_string.HedString method) (hed.models.hed_tag.HedTag method) create_file_dict() (hed.tools.analysis.file_dictionary.FileDictionary method) create_file_group() (hed.tools.bids.bids_file_group.BidsFileGroup static method) CURLY_BRACE_UNSUPPORTED_HERE (hed.errors.error_types.ValidationErrors attribute) CUSTOM_TITLE (hed.errors.error_types.ErrorContext attribute)

D

datafile_dict (hed.tools.bids.bids_file_group.BidsFileGroup attribute) dataframe (hed.models.base_input.BaseInput property) dataframe_a (hed.models.base_input.BaseInput property) def_dict (hed.models.sidecar.Sidecar property) DEF_EXPAND_INVALID (hed.errors.error_types.ValidationErrors attribute) DEF_INVALID (hed.errors.error_types.ValidationErrors attribute) default_unit (hed.models.hed_tag.HedTag property)

DefaultUnits (hed.schema.hed_schema_constants.HedKey attribute) DEFINITION_INVALID (hed.errors.error_types.ValidationErrors attribute) DefinitionDict (class in hed.models.definition_dict) DefValidator (class in hed.validator.def_validator) DeprecatedFrom (hed.schema.hed_schema_constants.HedKey attribute) DUPLICATE_COLUMN_BETWEEN_SOURCES (hed.errors.error_types.ValidationErrors attribute) DUPLICATE_COLUMN_IN_LIST (hed.errors.error_types.ValidationErrors attribute) duplicate_names (hed.schema.hed_schema_section.HedSchemaSection property)

E

ELEMENT_DEPRECATED (hed.errors.error_types.ValidationErrors attribute) ElementDomain (hed.schema.hed_schema_constants.HedKey attribute) entity_dict (hed.tools.bids.bids_file.BidsFile attribute) ERROR (hed.errors.error_types.ErrorSeverity attribute) ErrorContext (class in hed.errors.error_types) ErrorHandler (class in hed.errors.error_reporter) ErrorSeverity (class in hed.errors.error_types) EventManager (class in hed.tools.analysis.event_manager) EXCEL_EXTENSION (hed.models.base_input.BaseInput attribute)

expand_defs() (hed.models.base_input.BaseInput method) (hed.models.hed_string.HedString method) expandable (hed.models.hed_tag.HedTag property) expanded (hed.models.hed_tag.HedTag property) ext (hed.tools.bids.bids_file.BidsFile attribute) extension (hed.models.hed_tag.HedTag property) ExtensionAllowed (hed.schema.hed_schema_constants.HedKey attribute) extract_definitions() (hed.models.sidecar.Sidecar method) extract_sidecar_template() (hed.tools.analysis.tabular_summary.TabularSummary method) extract_summary() (hed.tools.analysis.tabular_summary.TabularSummary static method)

F

file_dict (hed.tools.analysis.file_dictionary.FileDictionary property) file_groups (hed.tools.bids.bids_dataset.BidsDataset attribute) file_list (hed.tools.analysis.file_dictionary.FileDictionary property) FILE_NAME (hed.errors.error_types.ErrorContext attribute) FILE_NOT_FOUND (hed.errors.exceptions.HedExceptions attribute) file_path (hed.tools.bids.bids_file.BidsFile attribute) FileDictionary (class in hed.tools.analysis.file_dictionary) filter_issues_by_count() (hed.errors.error_reporter.ErrorHandler static method) filter_issues_by_severity() (hed.errors.error_reporter.ErrorHandler static method) finalize_dictionaries() (hed.schema.hed_schema.HedSchema method) finalize_entry() (hed.schema.hed_schema_entry.HedSchemaEntry method) (hed.schema.hed_schema_entry.HedTagEntry method) (hed.schema.hed_schema_entry.UnitClassEntry method) (hed.schema.hed_schema_entry.UnitEntry method)

find_def_tags() (hed.models.hed_group.HedGroup method) find_exact_tags() (hed.models.hed_group.HedGroup method) find_placeholder_tag() (hed.models.hed_group.HedGroup method) find_tag_entry() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_group.HedSchemaGroup method) find_tags() (hed.models.hed_group.HedGroup method) find_tags_with_term() (hed.models.hed_group.HedGroup method) find_top_level_tags() (hed.models.hed_string.HedString method) find_wildcard_tags() (hed.models.hed_group.HedGroup method) format_error() (hed.errors.error_reporter.ErrorHandler static method) format_error_from_context() (hed.errors.error_reporter.ErrorHandler static method) format_error_with_context() (hed.errors.error_reporter.ErrorHandler method) from_dataframes() (in module hed.schema.hed_schema_io) from_hed_strings() (hed.models.hed_string.HedString static method) from_string() (in module hed.schema.hed_schema_io)

G

GENERIC_ERROR (hed.errors.exceptions.HedExceptions attribute) get() (hed.models.definition_dict.DefinitionDict method) (hed.schema.hed_schema_section.HedSchemaSection method) get_all_groups() (hed.models.hed_group.HedGroup method) get_all_tags() (hed.models.hed_group.HedGroup method) get_as_dataframes() (hed.schema.hed_schema.HedSchema method) get_as_form() (hed.models.hed_group.HedGroup method) get_as_indented() (hed.models.hed_group.HedGroup method) get_as_json_string() (hed.models.sidecar.Sidecar method) get_as_long() (hed.models.hed_group.HedGroup method) get_as_mediawiki_string() (hed.schema.hed_schema.HedSchema method) get_as_original() (hed.models.hed_string.HedString method) get_as_short() (hed.models.hed_group.HedGroup method) get_as_strings() (hed.models.definition_dict.DefinitionDict static method) get_as_xml_string() (hed.schema.hed_schema.HedSchema method) get_cache_directory() (in module hed.schema.hed_cache) get_candidates() (in module hed.tools.bids.bids_util) get_column_refs() (hed.models.base_input.BaseInput method) (hed.models.sidecar.Sidecar method) (hed.models.tabular_input.TabularInput method) get_columns_info() (hed.tools.analysis.tabular_summary.TabularSummary static method) get_conversion_factor() (hed.schema.hed_schema_entry.UnitEntry method) get_def_dict() (hed.models.base_input.BaseInput method) (hed.models.sidecar.Sidecar method) (hed.models.tabular_input.TabularInput method) get_def_information() (hed.validator.reserved_checker.ReservedChecker method) get_definition_entry() (hed.models.definition_dict.DefinitionDict method) get_derivative_unit_entry() (hed.schema.hed_schema_entry.UnitClassEntry method) get_entity() (hed.tools.bids.bids_file.BidsFile method) get_entries_with_attribute() (hed.schema.hed_schema_section.HedSchemaSection method) get_extras() (hed.schema.hed_schema.HedSchema method) get_factor_vectors() (hed.tools.analysis.hed_type_manager.HedTypeManager method) get_file_group() (hed.tools.bids.bids_dataset.BidsDataset method) get_file_path() (hed.tools.analysis.file_dictionary.FileDictionary method) get_first_group() (hed.models.hed_group.HedGroup method) get_formatted_version() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_group.HedSchemaGroup method) get_group_requirements() (hed.validator.reserved_checker.ReservedChecker method) get_hed_obj() (hed.tools.analysis.hed_tag_manager.HedTagManager method) get_hed_objs() (hed.tools.analysis.hed_tag_manager.HedTagManager method)

get_hed_version_path() (in module hed.schema.hed_cache) get_hed_versions() (in module hed.schema.hed_cache) get_hed_xml_version() (in module hed.schema.hed_schema_io) get_incompatible() (hed.validator.reserved_checker.ReservedChecker method) get_instance() (hed.validator.reserved_checker.ReservedChecker static method) get_key() (hed.tools.bids.bids_file.BidsFile method) get_library_data() (in module hed.schema.hed_cache) get_merged_sidecar() (in module hed.tools.bids.bids_util) get_normalized_str() (hed.models.hed_tag.HedTag method) get_number_unique() (hed.tools.analysis.tabular_summary.TabularSummary method) get_original_hed_string() (hed.models.hed_group.HedGroup method) get_printable_issue_string() (in module hed.errors.error_reporter) get_reserved() (hed.validator.reserved_checker.ReservedChecker method) get_save_header_attributes() (hed.schema.hed_schema.HedSchema method) get_schema_from_description() (in module hed.tools.bids.bids_util) get_schema_versions() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_group.HedSchemaGroup method) get_sidecar() (hed.models.tabular_input.TabularInput method) get_stripped_unit_value() (hed.models.hed_tag.HedTag method) get_summary() (hed.tools.analysis.hed_type.HedType method) (hed.tools.analysis.tabular_summary.TabularSummary method) (hed.tools.bids.bids_dataset.BidsDataset method) get_tag_attribute_names_old() (hed.schema.hed_schema.HedSchema method) get_tag_entry() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_group.HedSchemaGroup method) get_tag_unit_class_units() (hed.models.hed_tag.HedTag method) get_tags_with_attribute() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_group.HedSchemaGroup method) get_type() (hed.tools.analysis.hed_type_manager.HedTypeManager method) get_type_def_names() (hed.tools.analysis.hed_type.HedType method) (hed.tools.analysis.hed_type_manager.HedTypeManager method) get_type_defs() (hed.tools.analysis.event_manager.EventManager method) get_type_factors() (hed.tools.analysis.hed_type.HedType method) get_type_list() (hed.tools.analysis.hed_type.HedType static method) get_type_tag_factor() (hed.tools.analysis.hed_type_manager.HedTypeManager method) get_type_value_factors() (hed.tools.analysis.hed_type.HedType method) get_type_value_level_info() (hed.tools.analysis.hed_type.HedType method) get_type_value_names() (hed.tools.analysis.hed_type.HedType method) get_worksheet() (hed.models.base_input.BaseInput method) group_by_suffix() (in module hed.tools.bids.bids_util) groups() (hed.models.hed_group.HedGroup method)

H

has_attribute() (hed.models.hed_tag.HedTag method) (hed.schema.hed_schema_entry.HedSchemaEntry method) (hed.schema.hed_schema_entry.HedTagEntry method) has_column_names (hed.models.base_input.BaseInput property) has_duplicates() (hed.schema.hed_schema.HedSchema method) hed.schema.hed_cache module hed.schema.hed_schema_io module hed.tools.bids.bids_util module HED_BLANK_COLUMN (hed.errors.error_types.ValidationErrors attribute) HED_COLUMN_MISSING (hed.errors.error_types.ValidationErrors attribute) HED_COLUMN_NAME (hed.models.tabular_input.TabularInput attribute) HED_DEF_EXPAND_INVALID (hed.errors.error_types.ValidationErrors attribute) HED_DEF_EXPAND_UNMATCHED (hed.errors.error_types.ValidationErrors attribute) HED_DEF_EXPAND_VALUE_EXTRA (hed.errors.error_types.ValidationErrors attribute) HED_DEF_EXPAND_VALUE_MISSING (hed.errors.error_types.ValidationErrors attribute) HED_DEF_UNMATCHED (hed.errors.error_types.ValidationErrors attribute) HED_DEF_VALUE_EXTRA (hed.errors.error_types.ValidationErrors attribute) HED_DEF_VALUE_MISSING (hed.errors.error_types.ValidationErrors attribute) HED_GROUP_EMPTY (hed.errors.error_types.ValidationErrors attribute) HED_LIBRARY_UNMATCHED (hed.errors.error_types.ValidationErrors attribute) HED_MISSING_REQUIRED_COLUMN (hed.errors.error_types.ValidationErrors attribute) HED_MULTIPLE_TOP_TAGS (hed.errors.error_types.ValidationErrors attribute) HED_PLACEHOLDER_OUT_OF_CONTEXT (hed.errors.error_types.ValidationErrors attribute)

HED_RESERVED_TAG_GROUP_ERROR (hed.errors.error_types.ValidationErrors attribute) HED_RESERVED_TAG_REPEATED (hed.errors.error_types.ValidationErrors attribute) HED_SCHEMA_NODE_NAME_INVALID (hed.errors.exceptions.HedExceptions attribute) HED_STRING (hed.errors.error_types.ErrorContext attribute) HED_TAG_GROUP_TAG (hed.errors.error_types.ValidationErrors attribute) HED_TAG_REPEATED (hed.errors.error_types.ValidationErrors attribute) HED_TAG_REPEATED_GROUP (hed.errors.error_types.ValidationErrors attribute) HED_TAGS_NOT_ALLOWED (hed.errors.error_types.ValidationErrors attribute) HED_TOP_LEVEL_TAG (hed.errors.error_types.ValidationErrors attribute) HED_UNKNOWN_COLUMN (hed.errors.error_types.ValidationErrors attribute) HedExceptions (class in hed.errors.exceptions) HedFileError (class in hed.errors.exceptions) HedGroup (class in hed.models.hed_group) HedID (hed.schema.hed_schema_constants.HedKey attribute) HedKey (class in hed.schema.hed_schema_constants) HedSchema (class in hed.schema.hed_schema) HedSchemaEntry (class in hed.schema.hed_schema_entry) HedSchemaGroup (class in hed.schema.hed_schema_group) HedSchemaSection (class in hed.schema.hed_schema_section) HedSectionKey (class in hed.schema.hed_schema_constants) HedString (class in hed.models.hed_string) HedTag (class in hed.models.hed_tag) HedTagEntry (class in hed.schema.hed_schema_entry) HedTagManager (class in hed.tools.analysis.hed_tag_manager) HedType (class in hed.tools.analysis.hed_type) HedTypeManager (class in hed.tools.analysis.hed_type_manager) HedValidator (class in hed.validator.hed_validator)

I

IN_LIBRARY_IN_UNMERGED (hed.errors.exceptions.HedExceptions attribute) InLibrary (hed.schema.hed_schema_constants.HedKey attribute) INVALID_DATAFRAME (hed.errors.exceptions.HedExceptions attribute) INVALID_EXTENSION (hed.errors.exceptions.HedExceptions attribute) INVALID_FILE_FORMAT (hed.errors.exceptions.HedExceptions attribute) INVALID_HED_FORMAT (hed.errors.exceptions.HedExceptions attribute) INVALID_LIBRARY_PREFIX (hed.errors.exceptions.HedExceptions attribute) INVALID_PARENT_NODE (hed.errors.error_types.ValidationErrors attribute) INVALID_POUND_SIGNS_CATEGORY (hed.errors.error_types.SidecarErrors attribute) INVALID_POUND_SIGNS_VALUE (hed.errors.error_types.SidecarErrors attribute) INVALID_TAG_CHARACTER (hed.errors.error_types.ValidationErrors attribute) INVALID_VALUE_CLASS_CHARACTER (hed.errors.error_types.ValidationErrors attribute) INVALID_VALUE_CLASS_VALUE (hed.errors.error_types.ValidationErrors attribute)

is_basic_tag() (hed.models.hed_tag.HedTag method) is_column_ref() (hed.models.hed_tag.HedTag method) is_group (hed.models.hed_group.HedGroup property) (hed.models.hed_string.HedString property) is_hed() (hed.tools.bids.bids_sidecar_file.BidsSidecarFile static method) is_placeholder() (hed.models.hed_tag.HedTag method) is_sidecar_for() (hed.tools.bids.bids_sidecar_file.BidsSidecarFile method) is_takes_value_tag() (hed.models.hed_tag.HedTag method) is_unit_class_tag() (hed.models.hed_tag.HedTag method) is_value_class_tag() (hed.models.hed_tag.HedTag method) issues (hed.models.definition_dict.DefinitionDict property) items() (hed.models.definition_dict.DefinitionDict method) (hed.schema.hed_schema_section.HedSchemaSection method) iter_files() (hed.tools.analysis.file_dictionary.FileDictionary method)

K

key_diffs() (hed.tools.analysis.file_dictionary.FileDictionary method)

key_list (hed.tools.analysis.file_dictionary.FileDictionary property) keys() (hed.schema.hed_schema_section.HedSchemaSection method)

L

library (hed.schema.hed_schema.HedSchema property) LINE (hed.errors.error_types.ErrorContext attribute) load_schema() (in module hed.schema.hed_schema_io) load_schema_version() (in module hed.schema.hed_schema_io) load_sidecar_file() (hed.models.sidecar.Sidecar method)

load_sidecar_files() (hed.models.sidecar.Sidecar method) loaded_workbook (hed.models.base_input.BaseInput property) long_tag (hed.models.hed_tag.HedTag property) lower() (hed.models.hed_group.HedGroup method) (hed.models.hed_tag.HedTag method)

M

make_combined_dicts() (hed.tools.analysis.tabular_summary.TabularSummary static method) make_file_dict() (hed.tools.analysis.file_dictionary.FileDictionary static method) make_key() (hed.tools.analysis.file_dictionary.FileDictionary static method) matches_criteria() (in module hed.tools.bids.bids_util) merge_sidecar_list() (hed.tools.bids.bids_sidecar_file.BidsSidecarFile static method)

merged (hed.schema.hed_schema.HedSchema property) module hed.schema.hed_cache hed.schema.hed_schema_io hed.tools.bids.bids_util

N

name (hed.models.base_input.BaseInput property) (hed.tools.analysis.file_dictionary.FileDictionary property) needs_sorting (hed.models.base_input.BaseInput property)

NO_VALID_TAG_FOUND (hed.errors.error_types.ValidationErrors attribute) NODE_NAME_EMPTY (hed.errors.error_types.ValidationErrors attribute) NumericRange (hed.schema.hed_schema_constants.HedKey attribute)

O

ONSET_TOLERANCE (hed.validator.spreadsheet_validator.SpreadsheetValidator attribute) onsets (hed.models.base_input.BaseInput property) ONSETS_UNORDERED (hed.errors.error_types.ValidationErrors attribute) OnsetValidator (class in hed.validator.onset_validator)

OPENING_GROUP_CHARACTER (hed.models.hed_string.HedString attribute) org_base_tag (hed.models.hed_tag.HedTag property) org_tag (hed.models.hed_tag.HedTag property) output_files() (hed.tools.analysis.file_dictionary.FileDictionary method)

P

parent (hed.schema.hed_schema_entry.HedTagEntry property) parent_name (hed.schema.hed_schema_entry.HedTagEntry property) PARENTHESES_MISMATCH (hed.errors.error_types.ValidationErrors attribute) parse_bids_filename() (in module hed.tools.bids.bids_util) parse_version_list() (in module hed.schema.hed_schema_io)

pattern_doubleslash (hed.validator.hed_validator.HedValidator attribute) PLACEHOLDER_INVALID (hed.errors.error_types.ValidationErrors attribute) pop_error_context() (hed.errors.error_reporter.ErrorHandler method) properties (hed.schema.hed_schema.HedSchema property) Properties (hed.schema.hed_schema_constants.HedSectionKey attribute) push_error_context() (hed.errors.error_reporter.ErrorHandler method)

R

Recommended (hed.schema.hed_schema_constants.HedKey attribute) RelatedTag (hed.schema.hed_schema_constants.HedKey attribute) remove() (hed.models.hed_group.HedGroup method) remove_definitions() (hed.models.hed_string.HedString method) remove_refs() (hed.models.hed_string.HedString method) replace() (hed.models.hed_group.HedGroup static method) replace_placeholder() (hed.models.hed_tag.HedTag method) replace_tag_references() (in module hed.errors.error_reporter) RequireChild (hed.schema.hed_schema_constants.HedKey attribute) Required (hed.schema.hed_schema_constants.HedKey attribute) REQUIRED_TAG_MISSING (hed.errors.error_types.ValidationErrors attribute) Reserved (hed.schema.hed_schema_constants.HedKey attribute) reserved_category_values (hed.validator.sidecar_validator.SidecarValidator attribute)

reserved_column_names (hed.validator.sidecar_validator.SidecarValidator attribute) reserved_reqs_path (hed.validator.reserved_checker.ReservedChecker attribute) ReservedChecker (class in hed.validator.reserved_checker) reset_column_mapper() (hed.models.tabular_input.TabularInput method) reset_error_context() (hed.errors.error_reporter.ErrorHandler method) reset_mapper() (hed.models.base_input.BaseInput method) root_path (hed.tools.bids.bids_dataset.BidsDataset attribute) Rooted (hed.schema.hed_schema_constants.HedKey attribute) ROOTED_TAG_DOES_NOT_EXIST (hed.errors.exceptions.HedExceptions attribute) ROOTED_TAG_HAS_PARENT (hed.errors.exceptions.HedExceptions attribute) ROOTED_TAG_INVALID (hed.errors.exceptions.HedExceptions attribute) ROW (hed.errors.error_types.ErrorContext attribute) run_basic_checks() (hed.validator.hed_validator.HedValidator method) run_full_string_checks() (hed.validator.hed_validator.HedValidator method)

S

save_as_dataframes() (hed.schema.hed_schema.HedSchema method) save_as_json() (hed.models.sidecar.Sidecar method) save_as_mediawiki() (hed.schema.hed_schema.HedSchema method) save_as_xml() (hed.schema.hed_schema.HedSchema method) schema (hed.tools.bids.bids_dataset.BidsDataset attribute) SCHEMA_ATTRIBUTE (hed.errors.error_types.ErrorContext attribute) SCHEMA_DUPLICATE_FROM_LIBRARY (hed.errors.error_types.SchemaErrors attribute) SCHEMA_DUPLICATE_LIBRARY (hed.errors.exceptions.HedExceptions attribute) SCHEMA_DUPLICATE_NAMES (hed.errors.exceptions.HedExceptions attribute) SCHEMA_DUPLICATE_NODE (hed.errors.error_types.SchemaErrors attribute) SCHEMA_DUPLICATE_PREFIX (hed.errors.exceptions.HedExceptions attribute) schema_for_namespace() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_group.HedSchemaGroup method) SCHEMA_HEADER_INVALID (hed.errors.exceptions.HedExceptions attribute) SCHEMA_HEADER_MISSING (hed.errors.exceptions.HedExceptions attribute) SCHEMA_INVALID (hed.errors.exceptions.HedExceptions attribute) SCHEMA_INVALID_CHILD (hed.errors.error_types.SchemaErrors attribute) SCHEMA_INVALID_SIBLING (hed.errors.error_types.SchemaErrors attribute) SCHEMA_LIBRARY_INVALID (hed.errors.exceptions.HedExceptions attribute) SCHEMA_LOAD_FAILED (hed.errors.exceptions.HedExceptions attribute) schema_namespace (hed.models.hed_tag.HedTag property) (hed.schema.hed_schema.HedSchema property) SCHEMA_SECTION (hed.errors.error_types.ErrorContext attribute) SCHEMA_SECTION_MISSING (hed.errors.exceptions.HedExceptions attribute) SCHEMA_TAG (hed.errors.error_types.ErrorContext attribute) SCHEMA_TAG_TSV_BAD_PARENT (hed.errors.exceptions.HedExceptions attribute) SCHEMA_UNKNOWN_HEADER_ATTRIBUTE (hed.errors.exceptions.HedExceptions attribute) SCHEMA_VERSION_INVALID (hed.errors.exceptions.HedExceptions attribute) SchemaErrors (class in hed.errors.error_types) section_key (hed.schema.hed_schema_entry.HedSchemaEntry property) (hed.schema.hed_schema_section.HedSchemaSection property) series_a (hed.models.base_input.BaseInput property) series_filtered (hed.models.base_input.BaseInput property) set_cache_directory() (in module hed.schema.hed_cache) set_cell() (hed.models.base_input.BaseInput method) set_contents() (hed.tools.bids.bids_file.BidsFile method) (hed.tools.bids.bids_sidecar_file.BidsSidecarFile method) (hed.tools.bids.bids_tabular_file.BidsTabularFile method)

set_schema_prefix() (hed.schema.hed_schema.HedSchema method) set_sidecar() (hed.tools.bids.bids_tabular_file.BidsTabularFile method) short_base_tag (hed.models.hed_tag.HedTag property) short_tag (hed.models.hed_tag.HedTag property) shrink_defs() (hed.models.base_input.BaseInput method) (hed.models.hed_string.HedString method) Sidecar (class in hed.models.sidecar) SIDECAR_AND_OTHER_COLUMNS (hed.errors.error_types.ValidationErrors attribute) SIDECAR_BRACES_INVALID (hed.errors.error_types.SidecarErrors attribute) SIDECAR_COLUMN_NAME (hed.errors.error_types.ErrorContext attribute) sidecar_dict (hed.tools.bids.bids_file_group.BidsFileGroup attribute) sidecar_dir_dict (hed.tools.bids.bids_file_group.BidsFileGroup attribute) SIDECAR_HED_USED (hed.errors.error_types.SidecarErrors attribute) SIDECAR_INVALID (hed.errors.error_types.ValidationErrors attribute) SIDECAR_KEY_MISSING (hed.errors.error_types.ValidationErrors attribute) SIDECAR_KEY_NAME (hed.errors.error_types.ErrorContext attribute) SIDECAR_NA_USED (hed.errors.error_types.SidecarErrors attribute) SidecarErrors (class in hed.errors.error_types) SidecarValidator (class in hed.validator.sidecar_validator) SIUnit (hed.schema.hed_schema_constants.HedKey attribute) SIUnitModifier (hed.schema.hed_schema_constants.HedKey attribute) SIUnitSymbolModifier (hed.schema.hed_schema_constants.HedKey attribute) sort() (hed.models.hed_group.HedGroup method) sort_issues() (in module hed.errors.error_reporter) sorted() (hed.models.hed_group.HedGroup method) span (hed.models.hed_group.HedGroup property) split_hed_string() (hed.models.hed_string.HedString static method) split_into_groups() (hed.models.hed_string.HedString static method) SpreadsheetInput (class in hed.models.spreadsheet_input) SpreadsheetValidator (class in hed.validator.spreadsheet_validator) str_list_to_hed() (hed.tools.analysis.event_manager.EventManager method) StringRange (hed.schema.hed_schema_constants.HedKey attribute) STYLE_WARNING (hed.errors.error_types.ValidationErrors attribute) suffix (hed.tools.bids.bids_file.BidsFile attribute) (hed.tools.bids.bids_file_group.BidsFileGroup attribute) SuggestedTag (hed.schema.hed_schema_constants.HedKey attribute) summarize() (hed.tools.bids.bids_file_group.BidsFileGroup method) summarize_all() (hed.tools.analysis.hed_type_manager.HedTypeManager method)

T

TabularInput (class in hed.models.tabular_input) TabularSummary (class in hed.tools.analysis.tabular_summary) tag (hed.models.hed_tag.HedTag property) TAG_EMPTY (hed.errors.error_types.ValidationErrors attribute) tag_exists_in_schema() (hed.models.hed_tag.HedTag method) TAG_EXPRESSION_REPEATED (hed.errors.error_types.ValidationErrors attribute) TAG_EXTENDED (hed.errors.error_types.ValidationErrors attribute) TAG_EXTENSION_INVALID (hed.errors.error_types.ValidationErrors attribute) TAG_GROUP_ERROR (hed.errors.error_types.ValidationErrors attribute) TAG_INVALID (hed.errors.error_types.ValidationErrors attribute) tag_modified() (hed.models.hed_tag.HedTag method) TAG_NAMESPACE_PREFIX_INVALID (hed.errors.error_types.ValidationErrors attribute) TAG_NOT_UNIQUE (hed.errors.error_types.ValidationErrors attribute) TAG_REQUIRES_CHILD (hed.errors.error_types.ValidationErrors attribute) TagDomain (hed.schema.hed_schema_constants.HedKey attribute) TagGroup (hed.schema.hed_schema_constants.HedKey attribute)

TagRange (hed.schema.hed_schema_constants.HedKey attribute) tags (hed.schema.hed_schema.HedSchema property) Tags (hed.schema.hed_schema_constants.HedSectionKey attribute) tags() (hed.models.hed_group.HedGroup method) TakesValue (hed.schema.hed_schema_constants.HedKey attribute) TEMPORAL_ANCHORS (hed.validator.spreadsheet_validator.SpreadsheetValidator attribute) TEMPORAL_TAG_ERROR (hed.errors.error_types.ValidationErrors attribute) TEXT_EXTENSION (hed.models.base_input.BaseInput attribute) TILDES_UNSUPPORTED (hed.errors.error_types.ValidationErrors attribute) to_csv() (hed.models.base_input.BaseInput method) to_excel() (hed.models.base_input.BaseInput method) TopLevelTagGroup (hed.schema.hed_schema_constants.HedKey attribute) total_events (hed.tools.analysis.hed_type.HedType property) TSV_COLUMN_MISSING (hed.errors.error_types.ValidationErrors attribute) type_variables (hed.tools.analysis.hed_type.HedType property) types (hed.tools.analysis.hed_type_manager.HedTypeManager property)

U

unfold_context() (hed.tools.analysis.event_manager.EventManager method) Unique (hed.schema.hed_schema_constants.HedKey attribute) unit_classes (hed.models.hed_tag.HedTag property) (hed.schema.hed_schema.HedSchema property) unit_modifiers (hed.schema.hed_schema.HedSchema property) UnitClass (hed.schema.hed_schema_constants.HedKey attribute) UnitClassDomain (hed.schema.hed_schema_constants.HedKey attribute) UnitClassEntry (class in hed.schema.hed_schema_entry) UnitClasses (hed.schema.hed_schema_constants.HedSectionKey attribute) UnitClassRange (hed.schema.hed_schema_constants.HedKey attribute) UnitDomain (hed.schema.hed_schema_constants.HedKey attribute) UnitEntry (class in hed.schema.hed_schema_entry)

UnitModifierDomain (hed.schema.hed_schema_constants.HedKey attribute) UnitModifiers (hed.schema.hed_schema_constants.HedSectionKey attribute) UnitPrefix (hed.schema.hed_schema_constants.HedKey attribute) UnitRange (hed.schema.hed_schema_constants.HedKey attribute) units (hed.schema.hed_schema.HedSchema property) Units (hed.schema.hed_schema_constants.HedSectionKey attribute) UNITS_INVALID (hed.errors.error_types.ValidationErrors attribute) UnitSymbol (hed.schema.hed_schema_constants.HedKey attribute) UNKNOWN_COLUMN_TYPE (hed.errors.error_types.SidecarErrors attribute) update() (hed.tools.analysis.tabular_summary.TabularSummary method) update_entity() (in module hed.tools.bids.bids_util) update_summary() (hed.tools.analysis.tabular_summary.TabularSummary method) URL_ERROR (hed.errors.exceptions.HedExceptions attribute)

V

val_error_unknown() (hed.errors.error_reporter.ErrorHandler method) valid_prefixes (hed.schema.hed_schema.HedSchema property) (hed.schema.hed_schema_group.HedSchemaGroup property) validate() (hed.models.base_input.BaseInput method) (hed.models.hed_string.HedString method) (hed.models.sidecar.Sidecar method) (hed.tools.bids.bids_dataset.BidsDataset method) (hed.tools.bids.bids_file_group.BidsFileGroup method) (hed.validator.hed_validator.HedValidator method) (hed.validator.sidecar_validator.SidecarValidator method) (hed.validator.spreadsheet_validator.SpreadsheetValidator method) validate_datafiles() (hed.tools.bids.bids_file_group.BidsFileGroup method) validate_def_tags() (hed.validator.def_validator.DefValidator method) validate_def_value_units() (hed.validator.def_validator.DefValidator method) validate_onset_offset() (hed.validator.def_validator.DefValidator method) validate_sidecars() (hed.tools.bids.bids_file_group.BidsFileGroup method)

validate_structure() (hed.validator.sidecar_validator.SidecarValidator method) validate_temporal_relations() (hed.validator.onset_validator.OnsetValidator method) validate_units() (hed.validator.hed_validator.HedValidator method) ValidationErrors (class in hed.errors.error_types) value_as_default_unit() (hed.models.hed_tag.HedTag method) value_classes (hed.models.hed_tag.HedTag property) (hed.schema.hed_schema.HedSchema property) VALUE_INVALID (hed.errors.error_types.ValidationErrors attribute) ValueClass (hed.schema.hed_schema_constants.HedKey attribute) ValueClassDomain (hed.schema.hed_schema_constants.HedKey attribute) ValueClasses (hed.schema.hed_schema_constants.HedSectionKey attribute) ValueClassRange (hed.schema.hed_schema_constants.HedKey attribute) values() (hed.schema.hed_schema_section.HedSchemaSection method) version (hed.schema.hed_schema.HedSchema property) VERSION_DEPRECATED (hed.errors.error_types.ValidationErrors attribute) version_number (hed.schema.hed_schema.HedSchema property)

W

walk_back() (in module hed.tools.bids.bids_util) WARNING (hed.errors.error_types.ErrorSeverity attribute) WIKI_DELIMITERS_INVALID (hed.errors.exceptions.HedExceptions attribute) WIKI_LINE_INVALID (hed.errors.exceptions.HedExceptions attribute)

WIKI_LINE_START_INVALID (hed.errors.exceptions.HedExceptions attribute) WIKI_SEPARATOR_INVALID (hed.errors.exceptions.HedExceptions attribute) with_standard (hed.schema.hed_schema.HedSchema property) worksheet_name (hed.models.base_input.BaseInput property) WRONG_HED_DATA_TYPE (hed.errors.error_types.SidecarErrors attribute)