Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W _ __eq__() (hed.models.definition_entry.DefinitionEntry method) (hed.models.hed_group.HedGroup method) (hed.models.string_search.StringNode method) (hed.schema.hed_schema.HedSchema method) __getitem__() (hed.schema.hed_schema_section.HedSchemaUnitSection method) __init__() (hed.errors.error_reporter.ErrorHandler method) (hed.errors.exceptions.HedFileError method) (hed.models.base_input.BaseInput method) (hed.models.column_mapper.ColumnMapper method) (hed.models.column_metadata.ColumnMetadata method) (hed.models.def_expand_gather.DefExpandGatherer method) (hed.models.definition_dict.DefinitionDict method) (hed.models.definition_entry.DefinitionEntry method) (hed.models.hed_group.HedGroup method) (hed.models.hed_string.HedString method) (hed.models.hed_tag.HedTag method) (hed.models.query_handler.QueryHandler method) (hed.models.query_util.SearchResult method) (hed.models.sidecar.Sidecar method) (hed.models.spreadsheet_input.SpreadsheetInput method) (hed.models.string_search.StringNode method) (hed.models.tabular_input.TabularInput method) (hed.models.timeseries_input.TimeseriesInput method) (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_base.HedSchemaBase method) (hed.schema.hed_schema_entry.HedSchemaEntry method) (hed.schema.hed_schema_entry.HedTagEntry method) (hed.schema.hed_schema_entry.UnitClassEntry method) (hed.schema.hed_schema_entry.UnitEntry method) (hed.schema.hed_schema_group.HedSchemaGroup method) (hed.schema.hed_schema_section.HedSchemaSection method) (hed.schema.hed_schema_section.HedSchemaTagSection method) (hed.schema.schema_comparer.SchemaComparer method), [1] (hed.schema.schema_io.base2schema.SchemaLoader method) (hed.schema.schema_io.schema2df.Schema2DF method) (hed.schema.schema_io.schema2wiki.Schema2Wiki method) (hed.schema.schema_io.schema2xml.Schema2XML method) (hed.schema.schema_validation.compliance.SchemaValidator method) (hed.schema.schema_validation.compliance_summary.ComplianceSummary method) (hed.schema.schema_validation.hed_id_validator.HedIDValidator method) (hed.tools.analysis.column_name_summary.ColumnNameSummary method) (hed.tools.analysis.event_checker.EventChecker method) (hed.tools.analysis.event_checker.EventsChecker method) (hed.tools.analysis.event_manager.EventManager method) (hed.tools.analysis.events_summary.EventsSummary method) (hed.tools.analysis.file_dictionary.FileDictionary method) (hed.tools.analysis.hed_tag_counts.HedTagCount method) (hed.tools.analysis.hed_tag_counts.HedTagCounts method) (hed.tools.analysis.hed_tag_manager.HedTagManager method) (hed.tools.analysis.hed_type.HedType method) (hed.tools.analysis.hed_type_counts.HedTypeCount method) (hed.tools.analysis.hed_type_counts.HedTypeCounts method) (hed.tools.analysis.hed_type_defs.HedTypeDefs method) (hed.tools.analysis.hed_type_factors.HedTypeFactors method) (hed.tools.analysis.hed_type_manager.HedTypeManager method) (hed.tools.analysis.key_map.KeyMap method) (hed.tools.analysis.tabular_summary.TabularSummary method) (hed.tools.analysis.temporal_event.TemporalEvent method) (hed.tools.bids.bids_dataset.BidsDataset method) (hed.tools.bids.bids_file.BidsFile method) (hed.tools.bids.bids_file_group.BidsFileGroup method) (hed.tools.bids.bids_sidecar_file.BidsSidecarFile method) (hed.tools.bids.bids_tabular_file.BidsTabularFile method) (hed.validator.def_validator.DefValidator method) (hed.validator.hed_validator.HedValidator method) (hed.validator.onset_validator.OnsetValidator method) (hed.validator.sidecar_validator.SidecarValidator method) (hed.validator.spreadsheet_validator.SpreadsheetValidator method) (hed.validator.util.char_util.CharRexValidator method) (hed.validator.util.char_util.CharValidator method) (hed.validator.util.class_util.UnitValueValidator method) (hed.validator.util.dup_util.DuplicateChecker method) (hed.validator.util.group_util.GroupValidator method) __iter__() (hed.models.sidecar.Sidecar method) __str__() (hed.models.hed_group.HedGroup method) (hed.models.hed_tag.HedTag method) (hed.tools.analysis.tabular_summary.TabularSummary method) (hed.tools.analysis.temporal_event.TemporalEvent method) (hed.tools.bids.bids_file.BidsFile method) A ACTION_ROLES (hed.tools.analysis.event_checker.EventChecker attribute) add_columns() (in module hed.tools.util.data_util) add_context_and_filter() (hed.errors.error_reporter.ErrorHandler method) add_definitions() (hed.models.definition_dict.DefinitionDict method) add_descriptions() (hed.tools.analysis.hed_type_counts.HedTypeCounts method) add_sub_check() (hed.schema.schema_validation.compliance_summary.ComplianceSummary method) add_type() (hed.tools.analysis.hed_type_manager.HedTypeManager method) add_unit() (hed.schema.hed_schema_entry.UnitClassEntry method) aggregate_code_counts() (hed.errors.error_reporter.ErrorHandler static method) all_entries (hed.schema.hed_schema_section.HedSchemaSection attribute) all_hed_columns (hed.models.sidecar.Sidecar property) all_names (hed.schema.hed_schema_section.HedSchemaSection attribute) ALL_ROLES (hed.tools.analysis.event_checker.EventChecker attribute) ALL_TIME_KEYS (hed.models.model_constants.DefTagNames attribute) ALLOWED_ENCODINGS (hed.tools.analysis.hed_type_factors.HedTypeFactors attribute) AllowedCharacter (hed.schema.hed_schema_constants.HedKey attribute) ANNOTATION_PROPERTY_EXTERNAL (hed.schema.schema_comparer.SchemaComparer attribute), [1] AnnotationProperty (hed.schema.hed_schema_constants.HedKey attribute) append() (hed.models.hed_group.HedGroup method) assemble() (hed.models.base_input.BaseInput method) attribute_has_property() (hed.schema.hed_schema_entry.HedSchemaEntry method) attributes (hed.models.hed_tag.HedTag property) (hed.schema.hed_schema.HedSchema property) Attributes (hed.schema.hed_schema_constants.HedSectionKey attribute) B BAD_COLUMN_NAMES (hed.errors.exceptions.HedExceptions attribute) BAD_PARAMETERS (hed.errors.exceptions.HedExceptions attribute) base_tag (hed.models.hed_tag.HedTag property) base_tag_has_attribute() (hed.models.hed_tag.HedTag method) (hed.schema.hed_schema_entry.HedTagEntry method) BaseInput (class in hed.models.base_input) basic_search best practices BIDS dataset validation BidsDataset (class in hed.tools.bids.bids_dataset) BidsDataset class BidsFile (class in hed.tools.bids.bids_file) BidsFileGroup (class in hed.tools.bids.bids_file_group) BidsSidecarFile (class in hed.tools.bids.bids_sidecar_file) BidsTabularFile (class in hed.tools.bids.bids_tabular_file) BLANK_HED_STRING (hed.errors.error_types.SidecarErrors attribute) BoolProperty (hed.schema.hed_schema_constants.HedKeyOld attribute) BoolRange (hed.schema.hed_schema_constants.HedKey attribute) BOTH (hed.models.model_constants.TopTagReturnType attribute), [1] C cache_local_versions() (in module hed.schema.hed_cache) cache_xml_versions() (in module hed.schema.hed_cache) CAMEL_CASE_EXPRESSION (hed.validator.util.tag_util.TagValidator attribute) can_save() (hed.schema.hed_schema.HedSchema method) CANNOT_PARSE_JSON (hed.errors.exceptions.HedExceptions attribute) CANNOT_PARSE_RDF (hed.errors.exceptions.HedExceptions attribute) CANNOT_PARSE_XML (hed.errors.exceptions.HedExceptions attribute) casefold() (hed.models.hed_group.HedGroup method) (hed.models.hed_tag.HedTag method) Categorical (hed.models.column_metadata.ColumnType attribute) CHARACTER_INVALID (hed.errors.error_types.ValidationErrors attribute) CharRexValidator (class in hed.validator.util.char_util) CharValidator (class in hed.validator.util.char_util) check_annotation_attribute_values() (hed.schema.schema_validation.compliance.SchemaValidator method) check_attributes() (hed.schema.schema_validation.compliance.SchemaValidator method) check_capitalization() (hed.validator.util.tag_util.TagValidator method) check_compliance check_compliance() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_base.HedSchemaBase method) (hed.schema.hed_schema_group.HedSchemaGroup method) (in module hed.schema.schema_validation.compliance) check_count_tag_group_parentheses() (hed.validator.util.string_util.StringValidator static method) check_delimiter_issues_in_hed_string() (hed.validator.util.string_util.StringValidator method) check_df_columns() (in module hed.tools.analysis.annotation_util) check_duplicate_hed_ids() (hed.schema.schema_validation.compliance.SchemaValidator method) check_duplicate_names() (hed.schema.schema_validation.compliance.SchemaValidator method) check_extras_columns() (hed.schema.schema_validation.compliance.SchemaValidator method) check_filename() (in module hed.tools.util.io_util) check_for_banned_tags() (hed.validator.onset_validator.OnsetValidator static method) check_for_blank_names() (hed.models.column_mapper.ColumnMapper static method) check_for_definitions() (hed.models.definition_dict.DefinitionDict method) check_for_duplicates() (hed.validator.util.dup_util.DuplicateChecker method) check_for_invalid_extension_chars() (hed.validator.util.char_util.CharValidator method) check_for_mapping_issues() (hed.models.column_mapper.ColumnMapper method) check_for_placeholder() (hed.validator.util.tag_util.TagValidator static method) check_for_required_tags() (hed.validator.util.group_util.GroupValidator method) check_if_in_original() (hed.models.hed_group.HedGroup method) check_if_prerelease_version() (hed.schema.schema_validation.compliance.SchemaValidator method) check_invalid_character_issues() (hed.validator.util.char_util.CharValidator method) check_invalid_characters() (hed.schema.schema_validation.compliance.SchemaValidator method) check_match() (in module hed.tools.util.data_util) check_multiple_unique_tags_exist() (hed.validator.util.group_util.GroupValidator method) check_prologue_epilogue() (hed.schema.schema_validation.compliance.SchemaValidator method) check_reserved_compatibility() (hed.validator.reserved_checker.ReservedChecker method) check_tag_exists_in_schema() (hed.validator.util.tag_util.TagValidator static method) check_tag_formatting() (hed.validator.hed_validator.HedValidator method) check_tag_invalid_chars() (hed.validator.util.char_util.CharValidator method) check_tag_is_deprecated() (hed.validator.util.tag_util.TagValidator method) check_tag_level_issue() (hed.validator.util.group_util.GroupValidator static method) check_tag_requirements() (hed.validator.reserved_checker.ReservedChecker method) check_tag_requires_child() (hed.validator.util.tag_util.TagValidator static method) check_tag_unit_class_units_are_valid() (hed.validator.util.class_util.UnitValueValidator method) check_tag_value_class_valid() (hed.validator.util.class_util.UnitValueValidator method) children (hed.schema.hed_schema_entry.UnitClassEntry property) clean_filename() (in module hed.tools.util.io_util) clear_contents() (hed.tools.bids.bids_file.BidsFile method) CLI CLOSING_GROUP_CHARACTER (hed.models.hed_string.HedString attribute) (hed.validator.util.string_util.StringValidator attribute) COLUMN (hed.errors.error_types.ErrorContext attribute) column_data (hed.models.sidecar.Sidecar property) column_metadata() (hed.models.base_input.BaseInput method) column_prefix_dictionary (hed.models.column_mapper.ColumnMapper property) ColumnMapper (class in hed.models.column_mapper) ColumnMetadata (class in hed.models.column_metadata) ColumnNameSummary (class in hed.tools.analysis.column_name_summary) columns (hed.models.base_input.BaseInput property) (hed.tools.analysis.key_map.KeyMap property) ColumnType (class in hed.models.column_metadata) combine_dataframe() (hed.models.base_input.BaseInput static method) COMMA (hed.validator.util.string_util.StringValidator attribute) COMMA_MISSING (hed.errors.error_types.ValidationErrors attribute) command-line interface compare_differences() (hed.schema.schema_comparer.SchemaComparer method), [1] compare_schemas() (hed.schema.schema_comparer.SchemaComparer method), [1] ComplianceSummary (class in hed.schema.schema_validation.compliance_summary) compress_strings() (hed.tools.analysis.event_manager.EventManager static method) contents (hed.tools.bids.bids_file.BidsFile property) ConversionFactor (hed.schema.hed_schema_constants.HedKey attribute) convert_to_form() (hed.models.base_input.BaseInput method) (in module hed.models.df_util) convert_to_long() (hed.models.base_input.BaseInput method) convert_to_short() (hed.models.base_input.BaseInput method) copy() (hed.models.hed_group.HedGroup method) (hed.models.hed_string.HedString method) (hed.models.hed_tag.HedTag method) create_file_dict() (hed.tools.analysis.file_dictionary.FileDictionary method) create_file_group() (hed.tools.bids.bids_file_group.BidsFileGroup static method) create_template() (hed.tools.analysis.hed_tag_counts.HedTagCounts static method) CURLY_BRACE_UNSUPPORTED_HERE (hed.errors.error_types.ValidationErrors attribute) CUSTOM_TITLE (hed.errors.error_types.ErrorContext attribute) CUTOFF_TAGS (hed.tools.analysis.events_summary.EventsSummary attribute) D datafile_dict (hed.tools.bids.bids_file_group.BidsFileGroup attribute) dataframe (hed.models.base_input.BaseInput property) dataframe_a (hed.models.base_input.BaseInput property) dataset_description.json DATE_TIME_VALUE_CLASS (hed.validator.util.class_util.UnitValueValidator attribute) debugging def_dict (hed.models.sidecar.Sidecar property) DEF_EXPAND_INVALID (hed.errors.error_types.ValidationErrors attribute) DEF_EXPAND_KEY (hed.models.model_constants.DefTagNames attribute) DEF_INVALID (hed.errors.error_types.ValidationErrors attribute) DEF_KEY (hed.models.model_constants.DefTagNames attribute) DEFAULT_ALLOWED_PLACEHOLDER_CHARS (hed.validator.util.char_util.CharValidator attribute) default_unit (hed.models.hed_tag.HedTag property) DefaultUnits (hed.schema.hed_schema_constants.HedKey attribute) DefExpandGatherer (class in hed.models.def_expand_gather) DEFINITION_INVALID (hed.errors.error_types.ValidationErrors attribute) DEFINITION_KEY (hed.models.model_constants.DefTagNames attribute) DefinitionDict (class in hed.models.definition_dict) DefinitionEntry (class in hed.models.definition_entry) definitions DefTagNames (class in hed.models.model_constants) DefValidator (class in hed.validator.def_validator) DELAY_KEY (hed.models.model_constants.DefTagNames attribute) delete_columns() (in module hed.tools.util.data_util) delete_rows_by_column() (in module hed.tools.util.data_util) DeprecatedFrom (hed.schema.hed_schema_constants.HedKey attribute) derivative_units (hed.schema.hed_schema_entry.UnitClassEntry attribute) (hed.schema.hed_schema_entry.UnitEntry attribute) df_to_hed() (in module hed.tools.analysis.annotation_util) DIGIT_OR_POUND_EXPRESSION (hed.validator.util.class_util.UnitValueValidator attribute) DUPLICATE_COLUMN_BETWEEN_SOURCES (hed.errors.error_types.ValidationErrors attribute) DUPLICATE_COLUMN_IN_LIST (hed.errors.error_types.ValidationErrors attribute) duplicate_names (hed.schema.hed_schema_section.HedSchemaSection property) DuplicateChecker (class in hed.validator.util.dup_util) DURATION_KEY (hed.models.model_constants.DefTagNames attribute) DURATION_KEYS (hed.models.model_constants.DefTagNames attribute) E ELEMENT_DEPRECATED (hed.errors.error_types.ValidationErrors attribute) ElementDomain (hed.schema.hed_schema_constants.HedKey attribute) ElementProperty (hed.schema.hed_schema_constants.HedKeyOld attribute) entity_dict (hed.tools.bids.bids_file.BidsFile attribute) ERROR (hed.errors.error_types.ErrorSeverity attribute) ErrorContext (class in hed.errors.error_types) ErrorHandler (class in hed.errors.error_reporter) errors ErrorSeverity (class in hed.errors.error_types) event files EVENT_TAGS (hed.tools.analysis.event_checker.EventChecker attribute) EventChecker (class in hed.tools.analysis.event_checker) EventManager (class in hed.tools.analysis.event_manager) EventsChecker (class in hed.tools.analysis.event_checker) EventsSummary (class in hed.tools.analysis.events_summary) examples EXCEL_EXTENSION (hed.models.base_input.BaseInput attribute) EXCLUDED_PARENTS (hed.tools.analysis.events_summary.EventsSummary attribute) expand_defs() (hed.models.base_input.BaseInput method) (hed.models.hed_string.HedString method) (in module hed.models.df_util) expandable (hed.models.hed_tag.HedTag property) expanded (hed.models.hed_tag.HedTag property) expected_pound_sign_count() (hed.models.column_metadata.ColumnMetadata static method) ext (hed.tools.bids.bids_file.BidsFile attribute) extension (hed.models.hed_tag.HedTag property) ExtensionAllowed (hed.schema.hed_schema_constants.HedKey attribute) extract_def_names() (hed.tools.analysis.hed_type_defs.HedTypeDefs static method) extract_sidecar_template() (hed.tools.analysis.tabular_summary.TabularSummary method) extract_suffix_path() (in module hed.tools.util.io_util) extract_summary() (hed.tools.analysis.tabular_summary.TabularSummary static method) extract_tag_summary() (hed.tools.analysis.events_summary.EventsSummary method) extract_tags() (in module hed.tools.analysis.annotation_util) EXTRAS_SECTION (hed.schema.schema_comparer.SchemaComparer attribute), [1] F file_dict (hed.tools.analysis.file_dictionary.FileDictionary property) file_groups (hed.tools.bids.bids_dataset.BidsDataset attribute) file_list (hed.tools.analysis.file_dictionary.FileDictionary property) FILE_NAME (hed.errors.error_types.ErrorContext attribute) FILE_NOT_FOUND (hed.errors.exceptions.HedExceptions attribute) file_path (hed.tools.bids.bids_file.BidsFile attribute) FileDictionary (class in hed.tools.analysis.file_dictionary) filter_issues_by_count() (hed.errors.error_reporter.ErrorHandler static method) filter_issues_by_severity() (hed.errors.error_reporter.ErrorHandler static method) filter_series_by_onset() (in module hed.models.df_util) FILTERED_TAGS (hed.tools.analysis.events_summary.EventsSummary attribute) finalize_dictionaries() (hed.schema.hed_schema.HedSchema method) finalize_entry() (hed.schema.hed_schema_entry.HedSchemaEntry method) (hed.schema.hed_schema_entry.HedTagEntry method) (hed.schema.hed_schema_entry.UnitClassEntry method) (hed.schema.hed_schema_entry.UnitEntry method) find_def_tags() (hed.models.hed_group.HedGroup method) find_exact_tags() (hed.models.hed_group.HedGroup method) (hed.models.string_search.StringNode method) find_matching_tags() (hed.schema.schema_comparer.SchemaComparer method), [1] find_placeholder_tag() (hed.models.hed_group.HedGroup method) find_rooted_entry() (hed.schema.schema_io.base2schema.SchemaLoader static method) find_tag_entry() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_base.HedSchemaBase method) (hed.schema.hed_schema_group.HedSchemaGroup method) find_tags() (hed.models.hed_group.HedGroup method) find_tags_with_term() (hed.models.hed_group.HedGroup method) (hed.models.string_search.StringNode method) find_top_level_tags() (hed.models.hed_string.HedString method) find_wildcard_tags() (hed.models.hed_group.HedGroup method) (hed.models.string_search.StringNode method) fix_extra() (hed.schema.schema_io.base2schema.SchemaLoader method) fix_extras() (hed.schema.schema_io.base2schema.SchemaLoader method) flatten_schema() (in module hed.tools.util.schema_util) format_error() (hed.errors.error_reporter.ErrorHandler static method) format_error_from_context() (hed.errors.error_reporter.ErrorHandler static method) format_error_with_context() (hed.errors.error_reporter.ErrorHandler method) from_dataframes() (in module hed.schema.hed_schema_io) from_hed_strings() (hed.models.hed_string.HedString static method) from_string() (in module hed.schema.hed_schema_io) G gather_schema_changes() (hed.schema.schema_comparer.SchemaComparer method), [1] generate_schema_lookup() (in module hed.models.schema_lookup) generate_sidecar_entry() (in module hed.tools.analysis.annotation_util) GENERIC_ERROR (hed.errors.exceptions.HedExceptions attribute) get() (hed.models.definition_dict.DefinitionDict method) (hed.schema.hed_schema_section.HedSchemaSection method) (hed.schema.hed_schema_section.HedSchemaTagSection method) get_all_groups() (hed.models.hed_group.HedGroup method) (hed.models.string_search.StringNode method) get_all_tags() (hed.models.hed_group.HedGroup method) (hed.models.string_search.StringNode method) get_allowed() (in module hed.tools.util.io_util) get_alphanumeric_path() (in module hed.tools.util.io_util) get_as_dataframes() (hed.schema.hed_schema.HedSchema method) get_as_form() (hed.models.hed_group.HedGroup method) get_as_indented() (hed.models.hed_group.HedGroup method) get_as_json_string() (hed.models.sidecar.Sidecar method) (hed.schema.hed_schema.HedSchema method) get_as_long() (hed.models.hed_group.HedGroup method) get_as_mediawiki_string() (hed.schema.hed_schema.HedSchema method) get_as_original() (hed.models.hed_string.HedString method) get_as_short() (hed.models.hed_group.HedGroup method) get_as_strings() (hed.models.definition_dict.DefinitionDict static method) get_as_xml_string() (hed.schema.hed_schema.HedSchema method) get_basename() (in module hed.tools.util.io_util) get_cache_directory() (in module hed.schema.hed_cache) get_candidates() (in module hed.tools.bids.bids_util) get_code_counts() (hed.errors.error_reporter.ErrorHandler static method) get_column_mapping_issues() (hed.models.column_mapper.ColumnMapper method) get_column_refs() (hed.models.base_input.BaseInput method) (hed.models.sidecar.Sidecar method) (hed.models.tabular_input.TabularInput method) get_columns_info() (hed.tools.analysis.tabular_summary.TabularSummary static method) get_conversion_factor() (hed.schema.hed_schema_entry.UnitEntry method) get_def_dict get_def_dict() (hed.models.base_input.BaseInput method) (hed.models.column_mapper.ColumnMapper method) (hed.models.sidecar.Sidecar method) (hed.models.tabular_input.TabularInput method) get_def_information() (hed.validator.reserved_checker.ReservedChecker method) get_definition() (hed.models.definition_entry.DefinitionEntry method) get_definition_entry() (hed.models.definition_dict.DefinitionDict method) get_derivative_unit_entry() (hed.schema.hed_schema_entry.UnitClassEntry method) get_eligible_values() (in module hed.tools.util.data_util) get_empty() (hed.tools.analysis.hed_tag_counts.HedTagCount method) get_entity() (hed.tools.bids.bids_file.BidsFile method) get_entries_with_attribute() (hed.schema.hed_schema_section.HedSchemaSection method) get_error_lines() (hed.tools.analysis.event_checker.EventsChecker static method) get_extras() (hed.schema.hed_schema.HedSchema method) get_factor_vectors() (hed.tools.analysis.hed_type_manager.HedTypeManager method) get_factors() (hed.tools.analysis.hed_type_factors.HedTypeFactors method) get_file_group() (hed.tools.bids.bids_dataset.BidsDataset method) get_file_list() (in module hed.tools.util.io_util) get_file_path() (hed.tools.analysis.file_dictionary.FileDictionary method) get_filtered_by_element() (in module hed.tools.util.io_util) get_filtered_list() (in module hed.tools.util.io_util) get_first_group() (hed.models.hed_group.HedGroup method) get_formatted_version() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_base.HedSchemaBase method) (hed.schema.hed_schema_group.HedSchemaGroup method) get_full_extension() (in module hed.tools.util.io_util) get_group_requirements() (hed.validator.reserved_checker.ReservedChecker method) get_hash() (hed.validator.util.dup_util.DuplicateChecker method) get_hed_obj() (hed.tools.analysis.hed_tag_manager.HedTagManager method) get_hed_objs() (hed.tools.analysis.hed_tag_manager.HedTagManager method) get_hed_source() (hed.tools.analysis.event_checker.EventsChecker static method) get_hed_strings() (hed.models.column_metadata.ColumnMetadata method) get_hed_version_path() (in module hed.schema.hed_cache) get_hed_versions() (in module hed.schema.hed_cache) get_hed_xml_version() (in module hed.schema.hed_schema_io) get_incompatible() (hed.validator.reserved_checker.ReservedChecker method) get_info() (hed.tools.analysis.hed_tag_counts.HedTagCount method) get_instance() (hed.validator.reserved_checker.ReservedChecker static method) get_issue_details() (hed.tools.analysis.event_checker.EventsChecker static method) get_key() (hed.tools.bids.bids_file.BidsFile method) get_key_hash() (in module hed.tools.util.data_util) get_library_data() (in module hed.schema.hed_cache) get_merged_sidecar() (in module hed.tools.bids.bids_util) get_new_dataframe() (in module hed.tools.util.data_util) get_normalized_str() (hed.models.hed_tag.HedTag method) get_number_unique() (hed.tools.analysis.tabular_summary.TabularSummary method) get_onset_lines() (hed.tools.analysis.event_checker.EventsChecker method) get_original_hed_string() (hed.models.hed_group.HedGroup method) get_path_components() (in module hed.tools.util.io_util) get_printable_issue_string() (in module hed.errors.error_reporter) get_problem_chars() (hed.validator.util.char_util.CharRexValidator method) get_query_handlers() (in module hed.models.query_service) get_reserved() (hed.validator.reserved_checker.ReservedChecker method) get_row_hash() (in module hed.tools.util.data_util) get_save_header_attributes() (hed.schema.hed_schema.HedSchema method) get_schema_from_description() (in module hed.tools.bids.bids_util) get_schema_versions() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_base.HedSchemaBase method) (hed.schema.hed_schema_group.HedSchemaGroup method) get_sidecar() (hed.models.tabular_input.TabularInput method) get_stripped_unit_value() (hed.models.hed_tag.HedTag method) get_summary() (hed.schema.schema_validation.compliance_summary.ComplianceSummary method) (hed.tools.analysis.column_name_summary.ColumnNameSummary method) (hed.tools.analysis.hed_tag_counts.HedTagCount method) (hed.tools.analysis.hed_tag_counts.HedTagCounts method) (hed.tools.analysis.hed_type.HedType method) (hed.tools.analysis.hed_type_counts.HedTypeCount method) (hed.tools.analysis.hed_type_counts.HedTypeCounts method) (hed.tools.analysis.hed_type_factors.HedTypeFactors method) (hed.tools.analysis.tabular_summary.TabularSummary method) (hed.tools.bids.bids_dataset.BidsDataset method) get_tag_attribute_names_old() (hed.schema.hed_schema.HedSchema method) get_tag_columns() (hed.models.column_mapper.ColumnMapper method) get_tag_entry() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_base.HedSchemaBase method) (hed.schema.hed_schema_group.HedSchemaGroup method) get_tag_unit_class_units() (hed.models.hed_tag.HedTag method) get_tags_with_attribute() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_base.HedSchemaBase method) (hed.schema.hed_schema_group.HedSchemaGroup method) get_task_dict() (in module hed.tools.util.io_util) get_task_from_file() (in module hed.tools.util.io_util) get_task_names() (hed.tools.bids.bids_file_group.BidsFileGroup method) get_timestamp() (in module hed.tools.util.io_util) get_transformers() (hed.models.column_mapper.ColumnMapper method) get_type() (hed.tools.analysis.hed_type_manager.HedTypeManager method) get_type_def_names() (hed.tools.analysis.hed_type.HedType method) (hed.tools.analysis.hed_type_manager.HedTypeManager method) get_type_defs() (hed.tools.analysis.event_manager.EventManager method) get_type_factors() (hed.tools.analysis.hed_type.HedType method) get_type_list() (hed.tools.analysis.hed_type.HedType static method) get_type_tag_factor() (hed.tools.analysis.hed_type_manager.HedTypeManager method) get_type_value_factors() (hed.tools.analysis.hed_type.HedType method) get_type_value_level_info() (hed.tools.analysis.hed_type.HedType method) get_type_value_names() (hed.tools.analysis.hed_type.HedType method) get_type_values() (hed.tools.analysis.hed_type_defs.HedTypeDefs method) get_unique_suffixes() (in module hed.tools.util.io_util) get_value_dict() (in module hed.tools.util.data_util) get_worksheet() (hed.models.base_input.BaseInput method) getting started group_by_suffix() (in module hed.tools.bids.bids_util) GROUPS (hed.models.model_constants.TopTagReturnType attribute), [1] groups() (hed.models.hed_group.HedGroup method) (hed.models.string_search.StringNode method) GroupValidator (class in hed.validator.util.group_util) H has_attribute() (hed.models.hed_tag.HedTag method) (hed.schema.hed_schema_entry.HedSchemaEntry method) (hed.schema.hed_schema_entry.HedTagEntry method) has_column_names (hed.models.base_input.BaseInput property) has_duplicates() (hed.schema.hed_schema.HedSchema method) has_same_children() (hed.models.query_util.SearchResult method) has_same_tags() (hed.models.query_util.SearchResult method) HED HED IDs hed.schema.hed_cache module hed.schema.hed_schema_io module hed.schema.schema_comparer module hed.tools.analysis.annotation_util module hed.tools.bids.bids_util module hed.tools.util.data_util module hed.tools.util.io_util module hed.tools.util.schema_util module HED_BLANK_COLUMN (hed.errors.error_types.ValidationErrors attribute) HED_COLUMN_MISSING (hed.errors.error_types.ValidationErrors attribute) HED_COLUMN_NAME (hed.models.tabular_input.TabularInput attribute) (hed.models.timeseries_input.TimeseriesInput attribute) HED_DEF_EXPAND_INVALID (hed.errors.error_types.ValidationErrors attribute) HED_DEF_EXPAND_UNMATCHED (hed.errors.error_types.ValidationErrors attribute) HED_DEF_EXPAND_VALUE_EXTRA (hed.errors.error_types.ValidationErrors attribute) HED_DEF_EXPAND_VALUE_MISSING (hed.errors.error_types.ValidationErrors attribute) HED_DEF_UNMATCHED (hed.errors.error_types.ValidationErrors attribute) HED_DEF_VALUE_EXTRA (hed.errors.error_types.ValidationErrors attribute) HED_DEF_VALUE_MISSING (hed.errors.error_types.ValidationErrors attribute) hed_dict (hed.models.column_metadata.ColumnMetadata property) HED_GROUP_EMPTY (hed.errors.error_types.ValidationErrors attribute) HED_ID_SECTION (hed.schema.schema_comparer.SchemaComparer attribute), [1] HED_LIBRARY_UNMATCHED (hed.errors.error_types.ValidationErrors attribute) HED_MISSING_REQUIRED_COLUMN (hed.errors.error_types.ValidationErrors attribute) HED_MULTIPLE_TOP_TAGS (hed.errors.error_types.ValidationErrors attribute) HED_PLACEHOLDER_OUT_OF_CONTEXT (hed.errors.error_types.ValidationErrors attribute) HED_RESERVED_TAG_GROUP_ERROR (hed.errors.error_types.ValidationErrors attribute) HED_RESERVED_TAG_REPEATED (hed.errors.error_types.ValidationErrors attribute) HED_SCHEMA_NODE_NAME_INVALID (hed.errors.exceptions.HedExceptions attribute) HED_STRING (hed.errors.error_types.ErrorContext attribute) HED_TAG_GROUP_TAG (hed.errors.error_types.ValidationErrors attribute) HED_TAG_REPEATED (hed.errors.error_types.ValidationErrors attribute) HED_TAG_REPEATED_GROUP (hed.errors.error_types.ValidationErrors attribute) HED_TAGS_NOT_ALLOWED (hed.errors.error_types.ValidationErrors attribute) hed_to_df() (in module hed.tools.analysis.annotation_util) HED_TOP_LEVEL_TAG (hed.errors.error_types.ValidationErrors attribute) HED_UNKNOWN_COLUMN (hed.errors.error_types.ValidationErrors attribute) HedExceptions (class in hed.errors.exceptions) HedFileError (class in hed.errors.exceptions) HedGroup (class in hed.models.hed_group) HedID (hed.schema.hed_schema_constants.HedKey attribute) HedIDValidator (class in hed.schema.schema_validation.hed_id_validator) HedKey (class in hed.schema.hed_schema_constants) HedKeyOld (class in hed.schema.hed_schema_constants) hedpy hedpy schema HedSchema (class in hed.schema.hed_schema) HedSchemaBase (class in hed.schema.hed_schema_base) HedSchemaEntry (class in hed.schema.hed_schema_entry) HedSchemaGroup (class in hed.schema.hed_schema_group) HedSchemaSection (class in hed.schema.hed_schema_section) HedSchemaTagSection (class in hed.schema.hed_schema_section) HedSchemaUnitClassSection (class in hed.schema.hed_schema_section) HedSchemaUnitSection (class in hed.schema.hed_schema_section) HedSectionKey (class in hed.schema.hed_schema_constants) HedString (class in hed.models.hed_string) HedString class HedTag (class in hed.models.hed_tag) HedTagCount (class in hed.tools.analysis.hed_tag_counts) HedTagCounts (class in hed.tools.analysis.hed_tag_counts) HedTagEntry (class in hed.schema.hed_schema_entry) HedTagManager (class in hed.tools.analysis.hed_tag_manager) HEDTags (hed.models.column_metadata.ColumnType attribute) HedType (class in hed.tools.analysis.hed_type) HedTypeCount (class in hed.tools.analysis.hed_type_counts) HedTypeCounts (class in hed.tools.analysis.hed_type_counts) HedTypeDefs (class in hed.tools.analysis.hed_type_defs) HedTypeFactors (class in hed.tools.analysis.hed_type_factors) HedTypeManager (class in hed.tools.analysis.hed_type_manager) HedValidator (class in hed.validator.hed_validator) Hierarchical Event Descriptors I Ignore (hed.models.column_metadata.ColumnType attribute) InLibrary (hed.schema.hed_schema_constants.HedKey attribute) insert_issue_details() (hed.tools.analysis.event_checker.EventsChecker method) INSET_KEY (hed.models.model_constants.DefTagNames attribute) installation INVALID_DATAFRAME (hed.errors.exceptions.HedExceptions attribute) INVALID_EXTENSION (hed.errors.exceptions.HedExceptions attribute) INVALID_FILE_FORMAT (hed.errors.exceptions.HedExceptions attribute) INVALID_HED_FORMAT (hed.errors.exceptions.HedExceptions attribute) INVALID_PARENT_NODE (hed.errors.error_types.ValidationErrors attribute) INVALID_POUND_SIGNS_CATEGORY (hed.errors.error_types.SidecarErrors attribute) INVALID_POUND_SIGNS_VALUE (hed.errors.error_types.SidecarErrors attribute) INVALID_STRING_CHARS (hed.validator.util.char_util.CharValidator attribute) INVALID_STRING_CHARS_PLACEHOLDERS (hed.validator.util.char_util.CharValidator attribute) INVALID_TAG_CHARACTER (hed.errors.error_types.ValidationErrors attribute) INVALID_VALUE_CLASS_CHARACTER (hed.errors.error_types.ValidationErrors attribute) INVALID_VALUE_CLASS_VALUE (hed.errors.error_types.ValidationErrors attribute) is_basic_tag() (hed.models.hed_tag.HedTag method) is_column_ref() (hed.models.hed_tag.HedTag method) is_group (hed.models.hed_group.HedGroup property) (hed.models.hed_string.HedString property) is_hed() (hed.tools.bids.bids_sidecar_file.BidsSidecarFile static method) is_placeholder() (hed.models.hed_tag.HedTag method) is_sidecar_for() (hed.tools.bids.bids_sidecar_file.BidsSidecarFile method) is_takes_value_tag() (hed.models.hed_tag.HedTag method) is_unit_class_tag() (hed.models.hed_tag.HedTag method) is_valid_value() (hed.validator.util.char_util.CharRexValidator method) is_value_class_tag() (hed.models.hed_tag.HedTag method) IsInheritedProperty (hed.schema.hed_schema_constants.HedKeyOld attribute) issues (hed.models.definition_dict.DefinitionDict property) items() (hed.models.definition_dict.DefinitionDict method) (hed.schema.hed_schema_section.HedSchemaSection method) iter_errors() (in module hed.errors.error_reporter) iter_files() (hed.tools.analysis.file_dictionary.FileDictionary method) J JSON sidecar Jupyter notebooks K key_cols (hed.tools.analysis.key_map.KeyMap attribute) key_diffs() (hed.tools.analysis.file_dictionary.FileDictionary method) key_list (hed.tools.analysis.file_dictionary.FileDictionary property) KeyMap (class in hed.tools.analysis.key_map) keys() (hed.schema.hed_schema_section.HedSchemaSection method) L lang library library (hed.schema.hed_schema.HedSchema property) library schema LINE (hed.errors.error_types.ErrorContext attribute) load() (hed.schema.schema_io.base2schema.SchemaLoader class method) load_schema load_schema() (in module hed.schema.hed_schema_io) load_schema_lookup() (in module hed.models.schema_lookup) load_schema_version load_schema_version() (in module hed.schema.hed_schema_io) load_sidecar_file() (hed.models.sidecar.Sidecar method) load_sidecar_files() (hed.models.sidecar.Sidecar method) loaded_workbook (hed.models.base_input.BaseInput property) long_tag (hed.models.hed_tag.HedTag property) long_tag_name (hed.schema.hed_schema_entry.HedTagEntry attribute) lower() (hed.models.hed_group.HedGroup method) (hed.models.hed_tag.HedTag method) M make_combined_dicts() (hed.tools.analysis.tabular_summary.TabularSummary static method) make_file_dict() (hed.tools.analysis.file_dictionary.FileDictionary static method) make_info_dataframe() (in module hed.tools.util.data_util) make_key() (hed.tools.analysis.file_dictionary.FileDictionary static method) make_template() (hed.tools.analysis.key_map.KeyMap method) match_tags() (hed.tools.analysis.events_summary.EventsSummary static method) MATCH_TYPES (hed.tools.analysis.events_summary.EventsSummary attribute) matches_criteria() (in module hed.tools.bids.bids_util) merge_and_result() (hed.models.query_util.SearchResult method) merge_hed_dict() (in module hed.tools.analysis.annotation_util) merge_sidecar_list() (hed.tools.bids.bids_sidecar_file.BidsSidecarFile static method) merge_tag_dicts() (hed.tools.analysis.hed_tag_counts.HedTagCounts method) merged (hed.schema.hed_schema.HedSchema property) MISC_SECTION (hed.schema.schema_comparer.SchemaComparer attribute), [1] module hed.schema.hed_cache hed.schema.hed_schema_io hed.schema.schema_comparer hed.tools.analysis.annotation_util hed.tools.bids.bids_util hed.tools.util.data_util hed.tools.util.io_util hed.tools.util.schema_util N name (hed.models.base_input.BaseInput property) (hed.schema.hed_schema_base.HedSchemaBase property) (hed.tools.analysis.file_dictionary.FileDictionary property) (hed.tools.analysis.key_map.KeyMap attribute) NAME_VALUE_CLASS (hed.validator.util.class_util.UnitValueValidator attribute) needs_sorting (hed.models.base_input.BaseInput property) NO_VALID_TAG_FOUND (hed.errors.error_types.ValidationErrors attribute) NODE_NAME_EMPTY (hed.errors.error_types.ValidationErrors attribute) NodeProperty (hed.schema.hed_schema_constants.HedKeyOld attribute) NON_TASK_EVENTS (hed.tools.analysis.event_checker.EventChecker attribute) NUMERIC_VALUE_CLASS (hed.validator.util.class_util.UnitValueValidator attribute) NumericRange (hed.schema.hed_schema_constants.HedKey attribute) O OFFSET_KEY (hed.models.model_constants.DefTagNames attribute) ONSET_KEY (hed.models.model_constants.DefTagNames attribute) ONSET_TOLERANCE (hed.validator.spreadsheet_validator.SpreadsheetValidator attribute) onsets (hed.models.base_input.BaseInput property) ONSETS_UNORDERED (hed.errors.error_types.ValidationErrors attribute) OnsetValidator (class in hed.validator.onset_validator) OPENING_GROUP_CHARACTER (hed.models.hed_string.HedString attribute) (hed.validator.util.string_util.StringValidator attribute) org_base_tag (hed.models.hed_tag.HedTag property) org_tag (hed.models.hed_tag.HedTag property) organize_tags() (hed.tools.analysis.hed_tag_counts.HedTagCounts method) output_files() (hed.tools.analysis.file_dictionary.FileDictionary method) P parent (hed.schema.hed_schema_entry.HedTagEntry property) parent_name (hed.schema.hed_schema_entry.HedTagEntry property) PARENTHESES_MISMATCH (hed.errors.error_types.ValidationErrors attribute) parse_bids_filename() (in module hed.tools.bids.bids_util) parse_hed_string() (in module hed.models.string_search) parse_version_list() (in module hed.schema.hed_schema_io) pattern_doubleslash (hed.validator.hed_validator.HedValidator attribute) pip PLACEHOLDER_INVALID (hed.errors.error_types.ValidationErrors attribute) pop_error_context() (hed.errors.error_reporter.ErrorHandler method) PREFIXES (hed.schema.schema_comparer.SchemaComparer attribute), [1] pretty_print_change_dict() (hed.schema.schema_comparer.SchemaComparer method), [1] process_def_expands() (hed.models.def_expand_gather.DefExpandGatherer method) (in module hed.models.df_util) properties (hed.schema.hed_schema.HedSchema property) Properties (hed.schema.hed_schema_constants.HedSectionKey attribute) push_error_context() (hed.errors.error_reporter.ErrorHandler method) PyPI Q query QueryHandler (class in hed.models.query_handler) R Recommended (hed.schema.hed_schema_constants.HedKey attribute) record_issues() (hed.schema.schema_validation.compliance_summary.ComplianceSummary method) record_section() (hed.schema.schema_validation.compliance_summary.ComplianceSummary method) RelatedTag (hed.schema.hed_schema_constants.HedKey attribute) remap() (hed.tools.analysis.key_map.KeyMap method) remove() (hed.models.hed_group.HedGroup method) remove_definitions() (hed.models.hed_string.HedString method) remove_quotes() (hed.tools.analysis.key_map.KeyMap static method) remove_refs() (hed.models.hed_string.HedString method) REMOVE_TYPES (hed.tools.analysis.event_checker.EventsChecker attribute) (hed.tools.analysis.events_summary.EventsSummary attribute) reorder_columns() (in module hed.tools.util.data_util) replace() (hed.models.hed_group.HedGroup static method) replace_na() (in module hed.tools.util.data_util) replace_placeholder() (hed.models.hed_tag.HedTag method) replace_tag_references() (hed.errors.error_reporter.ErrorHandler static method) replace_values() (in module hed.tools.util.data_util) report_value_char_errors() (hed.validator.util.class_util.UnitValueValidator static method) report_value_errors() (hed.validator.util.class_util.UnitValueValidator static method) RequireChild (hed.schema.hed_schema_constants.HedKey attribute) Required (hed.schema.hed_schema_constants.HedKey attribute) REQUIRED_TAG_MISSING (hed.errors.error_types.ValidationErrors attribute) Reserved (hed.schema.hed_schema_constants.HedKey attribute) reserved_category_values (hed.validator.sidecar_validator.SidecarValidator attribute) reserved_column_names (hed.validator.sidecar_validator.SidecarValidator attribute) reserved_reqs_path (hed.validator.reserved_checker.ReservedChecker attribute) ReservedChecker (class in hed.validator.reserved_checker) reset_column_mapper() (hed.models.tabular_input.TabularInput method) reset_error_context() (hed.errors.error_reporter.ErrorHandler method) reset_mapper() (hed.models.base_input.BaseInput method) resort() (hed.tools.analysis.key_map.KeyMap method) root_path (hed.tools.bids.bids_dataset.BidsDataset attribute) Rooted (hed.schema.hed_schema_constants.HedKey attribute) ROW (hed.errors.error_types.ErrorContext attribute) run_all_tags_validators() (hed.validator.util.group_util.GroupValidator method) run_basic_checks() (hed.validator.hed_validator.HedValidator method) run_full_string_checks() (hed.validator.hed_validator.HedValidator method) run_individual_tag_validators() (hed.validator.util.tag_util.TagValidator method) run_string_validator() (hed.validator.util.string_util.StringValidator method) run_tag_level_validators() (hed.validator.util.group_util.GroupValidator method) S save_as_dataframes() (hed.schema.hed_schema.HedSchema method) save_as_json() (hed.models.sidecar.Sidecar method) (hed.schema.hed_schema.HedSchema method) save_as_mediawiki() (hed.schema.hed_schema.HedSchema method) save_as_xml() (hed.schema.hed_schema.HedSchema method) save_schema_lookup() (in module hed.models.schema_lookup) schema conversion development IDs library loading release validation, [1] schema (hed.schema.schema_io.base2schema.SchemaLoader property) (hed.tools.bids.bids_dataset.BidsDataset attribute) schema management schema validation Schema2DF (class in hed.schema.schema_io.schema2df) Schema2Wiki (class in hed.schema.schema_io.schema2wiki) Schema2XML (class in hed.schema.schema_io.schema2xml) schema_83_props (hed.schema.hed_schema_base.HedSchemaBase property) SCHEMA_ATTRIBUTE (hed.errors.error_types.ErrorContext attribute) SCHEMA_DUPLICATE_FROM_LIBRARY (hed.errors.error_types.SchemaErrors attribute) SCHEMA_DUPLICATE_LIBRARY (hed.errors.exceptions.HedExceptions attribute) SCHEMA_DUPLICATE_NAMES (hed.errors.exceptions.HedExceptions attribute) SCHEMA_DUPLICATE_NODE (hed.errors.error_types.SchemaErrors attribute) schema_for_namespace() (hed.schema.hed_schema.HedSchema method) (hed.schema.hed_schema_base.HedSchemaBase method) (hed.schema.hed_schema_group.HedSchemaGroup method) SCHEMA_HEADER_INVALID (hed.errors.exceptions.HedExceptions attribute) SCHEMA_INVALID (hed.errors.exceptions.HedExceptions attribute) SCHEMA_INVALID_CHILD (hed.errors.error_types.SchemaErrors attribute) SCHEMA_INVALID_SIBLING (hed.errors.error_types.SchemaErrors attribute) SCHEMA_LIBRARY_INVALID (hed.errors.exceptions.HedExceptions attribute) SCHEMA_LOAD_FAILED (hed.errors.exceptions.HedExceptions attribute) schema_namespace (hed.models.hed_tag.HedTag property) (hed.schema.hed_schema.HedSchema property) SCHEMA_SECTION (hed.errors.error_types.ErrorContext attribute) SCHEMA_SECTION_MISSING (hed.errors.exceptions.HedExceptions attribute) SCHEMA_TAG (hed.errors.error_types.ErrorContext attribute) SCHEMA_TAG_TSV_BAD_PARENT (hed.errors.exceptions.HedExceptions attribute) SCHEMA_VERSION_INVALID (hed.errors.exceptions.HedExceptions attribute) SchemaComparer (class in hed.schema.schema_comparer), [1] SchemaErrors (class in hed.errors.error_types) SchemaLoader (class in hed.schema.schema_io.base2schema) SchemaValidator (class in hed.schema.schema_validation.compliance) score library scripts search search() (hed.models.query_handler.QueryHandler method) (hed.models.string_search.StringQueryHandler method) search_hed_objs() (in module hed.models.query_service) SearchResult (class in hed.models.query_util) SECTION_ENTRY_NAMES (hed.schema.schema_comparer.SchemaComparer attribute), [1] SECTION_ENTRY_NAMES_PLURAL (hed.schema.schema_comparer.SchemaComparer attribute), [1] section_key (hed.schema.hed_schema_entry.HedSchemaEntry property) (hed.schema.hed_schema_section.HedSchemaSection property) separate_by_ext() (in module hed.tools.util.io_util) separate_issues() (in module hed.errors.error_reporter) separate_values() (in module hed.tools.util.data_util) series_a (hed.models.base_input.BaseInput property) series_filtered (hed.models.base_input.BaseInput property) series_to_factor() (in module hed.tools.analysis.annotation_util) set_cache_directory() (in module hed.schema.hed_cache) set_cell() (hed.models.base_input.BaseInput method) set_column_map() (hed.models.column_mapper.ColumnMapper method) set_column_prefix_dictionary() (hed.models.column_mapper.ColumnMapper method) set_contents() (hed.tools.bids.bids_file.BidsFile method) (hed.tools.bids.bids_sidecar_file.BidsSidecarFile method) (hed.tools.bids.bids_tabular_file.BidsTabularFile method) set_end() (hed.tools.analysis.temporal_event.TemporalEvent method) set_hed_strings() (hed.models.column_metadata.ColumnMetadata method) set_schema_prefix() (hed.schema.hed_schema.HedSchema method) set_sidecar() (hed.tools.bids.bids_tabular_file.BidsTabularFile method) set_tag_columns() (hed.models.column_mapper.ColumnMapper method) set_value() (hed.tools.analysis.hed_tag_counts.HedTagCount method) short_base_tag (hed.models.hed_tag.HedTag property) short_tag (hed.models.hed_tag.HedTag property) short_tag_name (hed.schema.hed_schema_entry.HedTagEntry attribute) shrink_defs() (hed.models.base_input.BaseInput method) (hed.models.hed_string.HedString method) (in module hed.models.df_util) Sidecar (class in hed.models.sidecar) Sidecar class sidecar validation SIDECAR_AND_OTHER_COLUMNS (hed.errors.error_types.ValidationErrors attribute) SIDECAR_BRACES_INVALID (hed.errors.error_types.SidecarErrors attribute) sidecar_column_data (hed.models.column_mapper.ColumnMapper property) SIDECAR_COLUMN_NAME (hed.errors.error_types.ErrorContext attribute) sidecar_dict (hed.tools.bids.bids_file_group.BidsFileGroup attribute) sidecar_dir_dict (hed.tools.bids.bids_file_group.BidsFileGroup attribute) SIDECAR_HED_USED (hed.errors.error_types.SidecarErrors attribute) SIDECAR_INVALID (hed.errors.error_types.ValidationErrors attribute) SIDECAR_KEY_MISSING (hed.errors.error_types.ValidationErrors attribute) SIDECAR_KEY_NAME (hed.errors.error_types.ErrorContext attribute) SIDECAR_NA_USED (hed.errors.error_types.SidecarErrors attribute) SidecarErrors (class in hed.errors.error_types) SidecarValidator (class in hed.validator.sidecar_validator) SIUnit (hed.schema.hed_schema_constants.HedKey attribute) SIUnitModifier (hed.schema.hed_schema_constants.HedKey attribute) SIUnitSymbolModifier (hed.schema.hed_schema_constants.HedKey attribute) sort() (hed.models.hed_group.HedGroup method) sort_dataframe_by_onsets() (in module hed.models.df_util) sort_issues() (in module hed.errors.error_reporter) sorted() (hed.models.hed_group.HedGroup method) source_dict (hed.models.column_metadata.ColumnMetadata property) SOURCES (hed.schema.schema_comparer.SchemaComparer attribute), [1] span (hed.models.hed_group.HedGroup property) split_delay_tags() (in module hed.models.df_util) split_hed_string() (hed.models.hed_string.HedString static method) split_into_groups() (hed.models.hed_string.HedString static method) split_name() (hed.tools.analysis.hed_type_defs.HedTypeDefs static method) SpreadsheetInput (class in hed.models.spreadsheet_input) SpreadsheetValidator (class in hed.validator.spreadsheet_validator) start_check() (hed.schema.schema_validation.compliance_summary.ComplianceSummary method) STIMULUS_ROLES (hed.tools.analysis.event_checker.EventChecker attribute) str_list_to_hed() (hed.tools.analysis.event_manager.EventManager method) str_to_tabular() (in module hed.tools.analysis.annotation_util) string search string_search() (in module hed.models.string_search) StringNode (class in hed.models.string_search) StringQueryHandler (class in hed.models.string_search) StringRange (hed.schema.hed_schema_constants.HedKey attribute) StringValidator (class in hed.validator.util.string_util) strs_to_hed_objs() (in module hed.tools.analysis.annotation_util) strs_to_sidecar() (in module hed.tools.analysis.annotation_util) STYLE_WARNING (hed.errors.error_types.ValidationErrors attribute) suffix (hed.tools.bids.bids_file.BidsFile attribute) (hed.tools.bids.bids_file_group.BidsFileGroup attribute) SuggestedTag (hed.schema.hed_schema_constants.HedKey attribute) summarize() (hed.tools.bids.bids_file_group.BidsFileGroup method) summarize_all() (hed.tools.analysis.hed_type_manager.HedTypeManager method) T TABLE_NAME (hed.errors.error_types.ErrorContext attribute) TabularInput (class in hed.models.tabular_input) TabularSummary (class in hed.tools.analysis.tabular_summary) tag (hed.models.hed_tag.HedTag property) TAG_ALLOWED_CHARS (hed.validator.util.char_util.CharValidator attribute) tag_columns (hed.models.column_mapper.ColumnMapper property) TAG_EMPTY (hed.errors.error_types.ValidationErrors attribute) tag_exists_in_schema() (hed.models.hed_tag.HedTag method) TAG_EXPRESSION_REPEATED (hed.errors.error_types.ValidationErrors attribute) TAG_EXTENDED (hed.errors.error_types.ValidationErrors attribute) TAG_EXTENSION_INVALID (hed.errors.error_types.ValidationErrors attribute) TAG_GROUP_ERROR (hed.errors.error_types.ValidationErrors attribute) TAG_INVALID (hed.errors.error_types.ValidationErrors attribute) tag_modified() (hed.models.hed_tag.HedTag method) TAG_NAMESPACE_PREFIX_INVALID (hed.errors.error_types.ValidationErrors attribute) TAG_NOT_UNIQUE (hed.errors.error_types.ValidationErrors attribute) TAG_REQUIRES_CHILD (hed.errors.error_types.ValidationErrors attribute) TagDomain (hed.schema.hed_schema_constants.HedKey attribute) TagGroup (hed.schema.hed_schema_constants.HedKey attribute) TagRange (hed.schema.hed_schema_constants.HedKey attribute) TAGS (hed.models.model_constants.TopTagReturnType attribute), [1] tags (hed.schema.hed_schema.HedSchema property) Tags (hed.schema.hed_schema_constants.HedSectionKey attribute) tags() (hed.models.hed_group.HedGroup method) (hed.models.string_search.StringNode method) TagValidator (class in hed.validator.util.tag_util) TakesValue (hed.schema.hed_schema_constants.HedKey attribute) target_cols (hed.tools.analysis.key_map.KeyMap attribute) TASK_ROLES (hed.tools.analysis.event_checker.EventChecker attribute) TEMPORAL_ANCHORS (hed.validator.spreadsheet_validator.SpreadsheetValidator attribute) TEMPORAL_KEYS (hed.models.model_constants.DefTagNames attribute) TEMPORAL_TAG_ERROR (hed.errors.error_types.ValidationErrors attribute) TemporalEvent (class in hed.tools.analysis.temporal_event) TEXT_EXTENSION (hed.models.base_input.BaseInput attribute) TEXT_VALUE_CLASS (hed.validator.util.class_util.UnitValueValidator attribute) TILDES_UNSUPPORTED (hed.errors.error_types.ValidationErrors attribute) TIMELINE_KEYS (hed.models.model_constants.DefTagNames attribute) TimeseriesInput (class in hed.models.timeseries_input) to_csv() (hed.models.base_input.BaseInput method) to_dict() (hed.tools.analysis.hed_type_counts.HedTypeCount method) to_excel() (hed.models.base_input.BaseInput method) to_factor() (in module hed.tools.analysis.annotation_util) to_strlist() (in module hed.tools.analysis.annotation_util) TopLevelTagGroup (hed.schema.hed_schema_constants.HedKey attribute) TopTagReturnType (class in hed.models.model_constants) total_entries_checked (hed.schema.schema_validation.compliance_summary.ComplianceSummary property) total_events (hed.tools.analysis.hed_type.HedType property) total_issues (hed.schema.schema_validation.compliance_summary.ComplianceSummary property) troubleshooting tsv files TSV_COLUMN_MISSING (hed.errors.error_types.ValidationErrors attribute) tutorial type_def_names (hed.tools.analysis.hed_type_defs.HedTypeDefs property) type_names (hed.tools.analysis.hed_type_defs.HedTypeDefs property) type_variables (hed.tools.analysis.hed_type.HedType property) types (hed.tools.analysis.hed_type_manager.HedTypeManager property) U unfold_context() (hed.tools.analysis.event_manager.EventManager method) Unique (hed.schema.hed_schema_constants.HedKey attribute) unit_class_entry (hed.schema.hed_schema_entry.UnitEntry attribute) unit_classes (hed.models.hed_tag.HedTag property) (hed.schema.hed_schema.HedSchema property) (hed.schema.hed_schema_entry.HedTagEntry attribute) unit_modifiers (hed.schema.hed_schema.HedSchema property) (hed.schema.hed_schema_entry.UnitEntry attribute) UnitClass (hed.schema.hed_schema_constants.HedKey attribute) UnitClassDomain (hed.schema.hed_schema_constants.HedKey attribute) UnitClassEntry (class in hed.schema.hed_schema_entry) UnitClasses (hed.schema.hed_schema_constants.HedSectionKey attribute) UnitClassProperty (hed.schema.hed_schema_constants.HedKeyOld attribute) UnitClassRange (hed.schema.hed_schema_constants.HedKey attribute) UnitDomain (hed.schema.hed_schema_constants.HedKey attribute) UnitEntry (class in hed.schema.hed_schema_entry) UnitModifierDomain (hed.schema.hed_schema_constants.HedKey attribute) UnitModifierProperty (hed.schema.hed_schema_constants.HedKeyOld attribute) UnitModifiers (hed.schema.hed_schema_constants.HedSectionKey attribute) UnitPrefix (hed.schema.hed_schema_constants.HedKey attribute) UnitProperty (hed.schema.hed_schema_constants.HedKeyOld attribute) UnitRange (hed.schema.hed_schema_constants.HedKey attribute) units (hed.schema.hed_schema.HedSchema property) Units (hed.schema.hed_schema_constants.HedSectionKey attribute) units (hed.schema.hed_schema_entry.UnitClassEntry attribute) UNITS_INVALID (hed.errors.error_types.ValidationErrors attribute) UnitSymbol (hed.schema.hed_schema_constants.HedKey attribute) UnitValueValidator (class in hed.validator.util.class_util) Unknown (hed.models.column_metadata.ColumnType attribute) UNKNOWN_COLUMN_TYPE (hed.errors.error_types.SidecarErrors attribute) update() (hed.tools.analysis.column_name_summary.ColumnNameSummary method) (hed.tools.analysis.hed_type_counts.HedTypeCount method) (hed.tools.analysis.hed_type_counts.HedTypeCounts method) (hed.tools.analysis.key_map.KeyMap method) (hed.tools.analysis.tabular_summary.TabularSummary method) update_entity() (in module hed.tools.bids.bids_util) update_headers() (hed.tools.analysis.column_name_summary.ColumnNameSummary method) update_summary() (hed.tools.analysis.hed_type_counts.HedTypeCounts method) (hed.tools.analysis.tabular_summary.TabularSummary method) update_tag_counts() (hed.tools.analysis.hed_tag_counts.HedTagCounts method) update_tags() (hed.tools.analysis.events_summary.EventsSummary method) URL_ERROR (hed.errors.exceptions.HedExceptions attribute) user guide V val_error_unknown() (hed.errors.error_reporter.ErrorHandler method) valid_attributes (hed.schema.hed_schema_section.HedSchemaSection attribute) valid_prefixes (hed.schema.hed_schema.HedSchema property) (hed.schema.hed_schema_base.HedSchemaBase property) (hed.schema.hed_schema_group.HedSchemaGroup property) validate method validate() (hed.models.base_input.BaseInput method) (hed.models.hed_string.HedString method) (hed.models.sidecar.Sidecar method) (hed.tools.bids.bids_dataset.BidsDataset method) (hed.tools.bids.bids_file_group.BidsFileGroup method) (hed.validator.hed_validator.HedValidator method) (hed.validator.sidecar_validator.SidecarValidator method) (hed.validator.spreadsheet_validator.SpreadsheetValidator method) validate_datafiles() (hed.tools.bids.bids_file_group.BidsFileGroup method) validate_def_tags() (hed.validator.def_validator.DefValidator method) validate_def_value_units() (hed.validator.def_validator.DefValidator method) validate_duration_tags() (hed.validator.util.group_util.GroupValidator static method) validate_event_tags() (hed.tools.analysis.event_checker.EventsChecker method) validate_onset_offset() (hed.validator.def_validator.DefValidator method) validate_sidecars() (hed.tools.bids.bids_file_group.BidsFileGroup method) validate_structure() (hed.validator.sidecar_validator.SidecarValidator method) validate_temporal_relations() (hed.validator.onset_validator.OnsetValidator method) validate_units() (hed.validator.hed_validator.HedValidator method) validate_value_class_type() (hed.validator.util.class_util.UnitValueValidator method) validation HED strings validation workflow ValidationErrors (class in hed.errors.error_types) Value (hed.models.column_metadata.ColumnType attribute) value_as_default_unit() (hed.models.hed_tag.HedTag method) value_classes (hed.models.hed_tag.HedTag property) (hed.schema.hed_schema.HedSchema property) (hed.schema.hed_schema_entry.HedTagEntry attribute) VALUE_INVALID (hed.errors.error_types.ValidationErrors attribute) ValueClass (hed.schema.hed_schema_constants.HedKey attribute) ValueClassDomain (hed.schema.hed_schema_constants.HedKey attribute) ValueClasses (hed.schema.hed_schema_constants.HedSectionKey attribute) ValueClassProperty (hed.schema.hed_schema_constants.HedKeyOld attribute) ValueClassRange (hed.schema.hed_schema_constants.HedKey attribute) values() (hed.schema.hed_schema_section.HedSchemaSection method) verify_tag_id() (hed.schema.schema_validation.hed_id_validator.HedIDValidator method) version (hed.schema.hed_schema.HedSchema property) VERSION_DEPRECATED (hed.errors.error_types.ValidationErrors attribute) version_number (hed.schema.hed_schema.HedSchema property) W walk_back() (in module hed.tools.bids.bids_util) WARNING (hed.errors.error_types.ErrorSeverity attribute) WIKI_DELIMITERS_INVALID (hed.errors.exceptions.HedExceptions attribute) WIKI_LINE_INVALID (hed.errors.exceptions.HedExceptions attribute) WIKI_LINE_START_INVALID (hed.errors.exceptions.HedExceptions attribute) WIKI_SEPARATOR_INVALID (hed.errors.exceptions.HedExceptions attribute) with_standard (hed.schema.hed_schema.HedSchema property) workflows worksheet_name (hed.models.base_input.BaseInput property) WRONG_HED_DATA_TYPE (hed.errors.error_types.SidecarErrors attribute)