Index

_

__init__() (hedvis.core.sequence_map.SequenceMap method) (hedvis.core.tag_visualizer.HedTagVisualizer method), [1] (hedvis.core.visualization_config.VisualizationConfig method), [1] (hedvis.core.visualization_config.WordCloudConfig method), [1] (hedvis.generators.word_cloud_util.ColormapColorFunc method)

A

API legacy new

B

background_color (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3]

best practices BIDS dataset, [1], [2] bug reports

C

color_func() (hedvis.generators.word_cloud_util.ColormapColorFunc method) color_range (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] color_step_range (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] colormap, [1] matplotlib plasma viridis colormap (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3]

ColormapColorFunc (class in hedvis.generators.word_cloud_util) configuration API dictionary contour_color (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] contour_width (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] create_wordcloud create_wordcloud() (in module hedvis.generators.word_cloud), [1] customization

D

data preparation dataset HED-annotated, [1] default_color_func() (in module hedvis.generators.word_cloud_util), [1]

dependencies optional, [1] dictionary documentation dot_str() (hedvis.core.sequence_map.SequenceMap method)

E

edge_to_str() (hedvis.core.sequence_map.SequenceMap method) errors empty word cloud font not found import mask not applied

event events file examples

F

filter_edges() (hedvis.core.sequence_map.SequenceMap method) font custom font size

font_path, [1] (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] from_dict() (hedvis.core.visualization_config.VisualizationConfig class method), [1] (hedvis.core.visualization_config.WordCloudConfig class method), [1]

G

generate_contour_svg() (in module hedvis.generators.word_cloud_util), [1]

get_edge_list() (hedvis.core.sequence_map.SequenceMap method) getting started

H

HED (Hierarchical Event Descriptors) hed-python hed-schemas HedTagCounts HedTagVisualizer, [1], [2] (class in hedvis.core.tag_visualizer), [1] hedtools, [1], [2], [3] hedvis, [1], [2] hedvis.core.sequence_map module

hedvis.core.tag_visualizer module hedvis.core.visualization_config module hedvis.generators.word_cloud module hedvis.generators.word_cloud_util module height (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] help

I

imports basic

installation, [1], [2] issues

L

load_and_resize_mask() (in module hedvis.generators.word_cloud), [1]

M

Mask image mask image, [1], [2] mask_path (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] max_font_size (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] migration dependencies

min_font_size (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] module hedvis.core.sequence_map hedvis.core.tag_visualizer hedvis.core.visualization_config hedvis.generators.word_cloud hedvis.generators.word_cloud_util

N

name (hedvis.core.sequence_map.SequenceMap attribute)

O

optimization

output_formats (hedvis.core.visualization_config.VisualizationConfig attribute), [1], [2], [3]

P

pandas DataFrame, [1], [2] patterns visualization performance pip extras, [1]

PNG format, [1] prefer_horizontal (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] prep() (hedvis.core.sequence_map.SequenceMap static method) PyPI pyproject.toml, [1]

Q

quick start

R

random_color_darker() (in module hedvis.generators.word_cloud_util) related projects

relative_scaling (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] requirements files deprecated

S

save_directory (hedvis.core.visualization_config.VisualizationConfig attribute), [1], [2], [3] scale_adjustment (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] SequenceMap (class in hedvis.core.sequence_map)

sidecar file support SVG format, [1], [2]

T

tabular data, [1] TabularInput tag filtering, [1], [2] HED tag counts

tag frequency, [1], [2], [3], [4] tag template, [1], [2] to_dict() (hedvis.core.visualization_config.VisualizationConfig method), [1] (hedvis.core.visualization_config.WordCloudConfig method), [1] troubleshooting tutorial

U

update() (hedvis.core.sequence_map.SequenceMap method)

use_mask (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] user guide

V

visualization HED publication-ready, [1] VisualizationConfig, [1] (class in hedvis.core.visualization_config), [1]

visualize_from_counts() (hedvis.core.tag_visualizer.HedTagVisualizer method), [1] visualize_from_dataframe visualize_from_dataframe() (hedvis.core.tag_visualizer.HedTagVisualizer method), [1] visualize_from_tabular() (hedvis.core.tag_visualizer.HedTagVisualizer method), [1]

W

width (hedvis.core.visualization_config.WordCloudConfig attribute), [1], [2], [3] Word cloud word cloud, [1], [2] shaped, [1] word frequency, [1]

word_cloud (hedvis.core.visualization_config.VisualizationConfig attribute), [1], [2], [3] word_cloud_to_svg word_cloud_to_svg() (in module hedvis.generators.word_cloud), [1] WordCloudConfig (class in hedvis.core.visualization_config), [1]